Job Description P75978 Confidence 99.89% Date Thu Jan 5 12:16:50 GMT 2012 Rank 1 Aligned Residues 371 % Identity 11% Template c3ezkB_ PDB info PDB header:hydrolase Chain: B: PDB Molecule:dna packaging protein gp17; PDBTitle: bacteriophage t4 gp17 motor assembly based on crystal2 structures and cryo-em reconstructions Resolution 34.00 Å

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		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80
Predicted Secondary structure
Query SS confidence
Query Sequence		M	S	T	K	L	T	G	Y	V	W	D	G	C	A	A	S	G	M	K	L	S	S	V	A	I	M	A	R	L	A	D	F	S	N	D	E	G	V	C	W	P	S	I	E	T	I	A	R	Q	I	G	A	G	M	S	T	V	R	T	A	I	A	R	L	E	A	E	G	W	L	T	R	K	A	R	R	Q	G	D	G
Query Conservation
Alig confidence															.	.
Template Conservation															.	.
Template Sequence		V	V	A	I	F	L	A	H	F	V	C	F	N	.	.	K	D	K	A	V	G	I	L	A	H	K	G	S	M	S	A	E	V	L	D	R	T	K	Q	A	I	E	L	L	P	D	F	L	Q	P	G	I	V	E	W	N	K	G	S	I	E	L	D	N	G	S	S	I	G	A	Y	A	S	S	P	D	A	V	R	G
Template Known Secondary structure														S	.	.	S	S								S	S																T	T	S		T	T	T	S				S				T	T					T	T	S
Template Predicted Secondary structure															.	.
Template SS confidence
		169	170	.	.	.	.	.	.	.	.	.	180	.			.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.
		81	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.		.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																		.
Query SS confidence																		.
Query Sequence		S	S	P	H	C	A	V	V	D	E	Y	H	E	H	A	T	.	D	A	L	Y	T	T	M	L	T	G	M	G	A	R	R	Q	P	L	M	W	A	I	T	T	A	G	Y	N	I	E	G	P	C	Y	D	K	R	R	E	V	I	E	M	L	N	G	S	V	P	N	D	E	L	F	G	I	I	Y	T	V	D	E	G
Query Conservation																		.
Alig confidence																		.																												.	.
Template Conservation																																														.	.
Template Sequence		N	S	F	A	M	I	Y	I	D	E	C	A	F	I	P	N	F	H	D	S	W	L	A	I	Q	P	V	I	S	S	G	R	R	S	K	I	I	I	T	T	T	P	N	G	.	.	L	N	H	F	Y	D	I	W	T	A	A	V	E	G	K	S	G	F	E	P	Y	T	A	I	W	N	S	V	K	E	R	L	Y	N
Template Known Secondary structure		S			S						S	G	G	G		S	S														S	S	S												S	.	.	S	S											T	S		S	S								G	G	G	S	S	T	T	T	B
Template Predicted Secondary structure																																														.	.
Template SS confidence
		247	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290			.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.
		160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.
Predicted Secondary structure																																																																													.	.	.	.	.
Query SS confidence																																																																													.	.	.	.	.
Query Sequence		D	D	W	T	D	P	Q	V	L	E	K	A	N	P	N	I	G	V	S	V	Y	R	E	F	L	L	S	Q	Q	Q	R	A	K	N	N	A	R	L	A	N	V	F	K	T	K	H	L	N	I	W	A	S	A	R	S	A	Y	F	N	L	V	S	W	Q	S	C	E	D	K	S	L	T	L	E	Q	.	.	.	.	.
Query Conservation																																																																													.	.	.	.	.
Alig confidence											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																																	.	.	.	.	.
Template Conservation											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		D	E	D	I	F	D	D	G	W	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	Q	W	S	I	Q	T	I	N	G	S	S	L	A	Q	F	R	Q	E	H	T	A	A	F	E	G	T	S	G	T	L	I	S	G	M	K	L	A	V	M	D	F	I	E	V	T	P	D	D	H	G	F	H	Q
Template Known Secondary structure		T	T	S	B	B		S	S		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.										S									T	S				S	S					S	S						T	T										S	S	S
Template Predicted Secondary structure											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		325	.	.	.	.	330	.	.	.																			.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.
						235	.	.	.	.	240	.	.	.	.	.	.	.	.			.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.
Predicted Secondary structure		.	.	.	.															.	.
Query SS confidence		.	.	.	.															.	.
Query Sequence		.	.	.	.	F	E	G	Q	P	C	I	L	A	F	D	L	A	R	.	.	K	L	D	M	N	S	M	A	R	L	Y	T	R	E	I	D	G	K	T	H	Y	Y	S	V	A	P	R	F	W	V	P	Y	D	T	V	Y	S	V	E	K	N	E	D	R	R	T	A	E	R	F	Q	K	W	V	E	M	G	V	L	T
Query Conservation		.	.	.	.															.	.
Alig confidence		.	.	.	.															.	.													.	.																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																		.	.																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		F	K	K	P	E	P	D	R	K	Y	I	A	T	L	D	C	S	E	G	R	G	Q	D	Y	H	A	L	H	I	I	D	V	.	.	T	D	D	V	W	E	Q	V	G	V	L	H	S	N	T	I	S	H	L	I	L	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure		S	S				T	T											S	S	S	S	S	S										.	.	S	S	S	S	B	B								S	S	S		T	T	T		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																		.	.																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		387	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.			.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.
		309	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.											.	.	.	.	.	370	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																										.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																										.	.	.	.	.	.	.	.	.	.
Query Sequence		V	T	D	G	A	E	V	D	Y	R	Y	I	L	E	E	A	K	A	A	N	K	I	S	P	V	S	E	S	P	I	D	P	F	G	A	T	G	L	S	H	D	L	A	D	E	D	L	N	P	V	T	I	I	Q	N	Y	.	.	.	.	.	.	.	.	.	.	T	N	M	S	D	P	M	K	E	L	E	A	A	I
Query Conservation																																																										.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.																																													.	.	.	.	.	.	.	.	.	.
Template Conservation		.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	.	.	.	.	.	P	D	I	V	M	R	Y	L	V	E	Y	N	E	C	P	V	Y	I	E	L	N	S	T	G	V	S	V	A	K	S	L	Y	M	D	L	E	Y	E	G	V	I	C	D	S	Y	T	D	L	G	M	K	Q	T	K	R	T	K	A	V	G	C	S	T	L	K	D	L	I
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.											T	T	S								S	T	T										T	T	S			T	T		B		S	S	S	S		S	S
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
														440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.
		379	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	S	G	R	F	H	H	D	G	N	P	I	M	T	W	C	I	G	N	V	V	G	K	T	I	P	G	N	D	D	V	V	K	P	V	K	E	Q	A	E	N	K	I	D	G	A	V	A	L	I	M	A	V	G	R	A	M	L	Y	E	K	E	D
Query Conservation
Alig confidence																	.													.	.	.	.	.	.	.	.
Template Conservation																	.													.	.	.	.	.	.	.	.
Template Sequence		E	K	D	K	L	I	I	H	H	R	A	T	I	Q	E	.	F	R	T	F	S	E	K	G	V	S	W	A	.	.	.	.	.	.	.	.	A	E	E	G	Y	H	D	D	L	V	M	S	L	V	I	F	G	W	L	S	T	Q	S	K	F	I	D
Template Known Secondary structure			T	T	S	B											.		T	T					S	S	S			.	.	.	.	.	.	.	.		S	S	S	S		T														T	S	G	G	G	G
Template Predicted Secondary structure																	.													.	.	.	.	.	.	.	.
Template SS confidence
		508	.	510	.	.	.	.	.	.	.	.	.	520	.	.		.	.	.	.	.	.	.	530	.	.	.	.									.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.