Job Description P75978 Confidence 95.99% Date Thu Jan 5 12:16:50 GMT 2012 Rank 3 Aligned Residues 155 % Identity 10% Template c3c6aA_ PDB info PDB header:viral protein Chain: A: PDB Molecule:terminase large subunit; PDBTitle: crystal structure of the rb49 gp17 nuclease domain Resolution 1.16 Å

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		236	.	.	.	240	.	.	.	.	.	.	.	.			.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.
Predicted Secondary structure															.	.
Query SS confidence															.	.
Query Sequence		E	G	Q	P	C	I	L	A	F	D	L	A	R	.	.	K	L	D	M	N	S	M	A	R	L	Y	T	R	E	I	D	G	K	T	H	Y	Y	S	V	A	P	R	F	W	V	P	Y	D	T	V	Y	S	V	E	K	N	E	D	R	R	T	A	E	R	F	Q	K	W	V	E	M	G	V	L	T	V	T	D	G	A
Query Conservation															.	.
Alig confidence															.	.											.	.	.															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																											.	.	.															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		E	G	R	K	Y	V	A	T	L	D	C	S	E	G	R	G	Q	D	Y	H	A	L	Q	I	I	.	.	.	D	I	T	E	F	P	Y	K	Q	V	A	V	Y	H	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S	N
Template Known Secondary structure		T	T												S	S	S	S									.	.	.			S	S	S	S									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.		S
Template Predicted Secondary structure																											.	.	.															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		389	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.				.	.	.	.	.	.	420	.	.	.	.	.	.	.																																					.	.
		314	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.		.	.	.	.	350	.	.	.										.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.
Predicted Secondary structure																																		.									.	.	.	.	.	.	.	.	.
Query SS confidence																																		.									.	.	.	.	.	.	.	.	.
Query Sequence		E	V	D	Y	R	Y	I	L	E	E	A	K	A	A	N	K	I	S	P	V	S	E	S	P	I	D	P	F	G	A	T	G	.	L	S	H	D	L	A	D	E	.	.	.	.	.	.	.	.	.	D	L	N	P	V	T	I	I	Q	N	Y	T	N	M	S	D	P	M	K	E	L	E	A	A	I	E	S	G	R	F
Query Conservation																																		.									.	.	.	.	.	.	.	.	.
Alig confidence																																		.									.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		T	T	S	H	F	I	L	P	D	I	V	F	K	Y	L	M	M	Y	N	E	C	P	V	Y	I	E	L	N	S	T	G	V	S	I	A	K	S	L	A	M	D	L	E	Y	D	N	I	I	C	D	S	F	I	D	L	G	M	K	Q	S	K	R	S	K	A	M	G	C	S	A	L	K	D	L	I	E	K	D	K	L
Template Known Secondary structure					T	T	T												T	T	S						B		S													T	S					B			S	B	T	T	B	S	S	B																				T	T
Template Predicted Secondary structure
Template SS confidence
		430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.
		384	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		H	H	D	G	N	P	I	M	T	W	C	I	G	N	V	V	G	K	T	I	P	G	N	D	D	V	V	K	P	V	K	E	Q	A	E	N	K	I	D	G	A	V	A	L	I	M	A	V	G	R	A	M	L	Y	E	K	E	D	T	L	S	D	H
Query Conservation
Alig confidence																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		I	I	N	H	K	G	T	I	Q	E	L	R	T	F	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S	E	K	G	F	H	D	D	L	V	M	S	L	V	I	F	G	W	L	T	T	Q	E	K	F	A	E	Y	A	G	K	D
Template Known Secondary structure																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	B	S																			T	S	G	G	G	G	G	T	S	S
Template Predicted Secondary structure																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		510	.	.	.	.	.	.	.	.	.	520	.	.	.																		.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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