Job Description P75978 Confidence 90.96% Date Thu Jan 5 12:16:50 GMT 2012 Rank 4 Aligned Residues 151 % Identity 11% Template c2wbnA_ PDB info PDB header:viral protein Chain: A: PDB Molecule:terminase large subunit; PDBTitle: crystal structure of the g2p (large terminase) nuclease2 domain from the bacteriophage spp1 Resolution 1.90 Å

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		241	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320
Predicted Secondary structure
Query SS confidence
Query Sequence		I	L	A	F	D	L	A	R	K	L	D	M	N	S	M	A	R	L	Y	T	R	E	I	D	G	K	T	H	Y	Y	S	V	A	P	R	F	W	V	P	Y	D	T	V	Y	S	V	E	K	N	E	D	R	R	T	A	E	R	F	Q	K	W	V	E	M	G	V	L	T	V	T	D	G	A	E	V	D	Y	R	Y	I
Query Conservation
Alig confidence																											.	.	.																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																											.	.	.																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		R	Q	G	L	D	F	G	Y	G	P	D	P	L	A	F	V	R	W	H	Y	D	K	R	K	N	.	.	.	R	I	Y	A	I	D	E	L	V	D	H	K	V	S	L	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	K	R	T
Template Known Secondary structure									B	T	T	B											T	T	T	T	.	.	.											S	S				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																											.	.	.																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		262	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.				.	.	.	290	.	.	.	.	.	.	.	.	.	300	.																																			.	.	.
		321	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.		.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.		.	.	.	.	390	.	.	.	.	.	.	.	.
Predicted Secondary structure																																								.																												.
Query SS confidence																																								.																												.
Query Sequence		L	E	E	A	K	A	A	N	K	I	S	P	V	S	E	S	P	I	D	P	F	G	A	T	G	L	S	H	D	L	A	D	E	D	L	N	P	V	.	T	I	I	Q	N	Y	T	N	M	S	D	P	M	K	E	L	E	A	A	I	E	S	G	R	F	H	H	.	D	G	N	P	I	M	T	W	C	I	G	N	V
Query Conservation																																								.																												.
Alig confidence										.	.																													.																				.	.							.
Template Conservation										.	.																																																	.	.
Template Sequence		A	D	F	V	R	K	N	K	.	.	Y	E	S	A	R	I	I	A	D	S	S	E	P	R	S	I	D	A	L	K	L	E	H	G	I	N	R	I	E	G	A	K	K	G	P	D	S	V	E	H	G	E	R	W	L	D	E	L	.	.	D	A	I	V	I	D	P	L	R	T	P	N	I	A	R	E	F	E	N	I
Template Known Secondary structure								T	T	.	.		T	T	S						T	T											T	T			T	T						S		G	G	G										T	S	.	.	S						T	T	T
Template Predicted Secondary structure										.	.																																																	.	.
Template SS confidence
		305	.	.	.	.	310	.	.			.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360			.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380
		399	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	G	K	T	I	P	G	N	D	D	V	V	K	P	V	K	E	Q	A	E	N	K	I	D	G	A	V	A	L	I	M	A	V	G	R	A	M	L
Query Conservation
Alig confidence																					.	.	.	.
Template Conservation																					.	.	.	.
Template Sequence		D	Y	Q	T	D	K	N	G	D	P	I	P	R	L	E	D	K	D	N	.	.	.	.	H	T	I	D	A	T	R	Y	A	F	E	R	D	X	K
Template Known Secondary structure							T	T									S	S	S		.	.	.	.										T	G	G	G
Template Predicted Secondary structure																					.	.	.	.
Template SS confidence
		381	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.					400	.	.	.	.	.	.	.	.	.	410	.	.	.	.

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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