Job Description P77736 Confidence 99.93% Date Thu Jan 5 12:32:20 GMT 2012 Rank 19 Aligned Residues 196 % Identity 14% Template c2fo1E_ PDB info PDB header:gene regulation/signalling protein/dna Chain: E: PDB Molecule:lin-12 protein; PDBTitle: crystal structure of the csl-notch-mastermind ternary2 complex bound to dna Resolution 3.12 Å

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		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.		.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80
Predicted Secondary structure																	.
Query SS confidence																	.
Query Sequence		S	I	K	N	L	P	A	D	Y	L	L	A	A	Q	Q	.	G	D	I	D	K	V	K	T	C	L	A	L	G	V	D	I	N	T	C	D	R	Q	G	K	T	A	I	T	L	A	S	L	Y	Q	Q	Y	A	C	V	Q	A	L	I	D	A	G	A	D	I	N	K	Q	D	H	T	C	L	N	P	F	L	I	S	C
Query Conservation																	.
Alig confidence																	.																		.
Template Conservation																																			.
Template Sequence		P	X	E	N	E	E	S	P	I	K	L	H	T	E	A	A	G	S	Y	A	I	T	E	P	I	T	R	E	S	V	N	I	I	.	D	P	R	H	N	R	T	V	L	H	W	I	A	S	N	S	S	A	E	K	S	E	D	L	I	V	H	E	A	K	E	C	I	A	A	G	A	D	V	N	A	X	D	C	D	E
Template Known Secondary structure																		S	S	S				S			S	T	T	T	T	T	T		.			S	S											T	T			S			T	T												T				T	T				T	T	S
Template Predicted Secondary structure																																			.
Template SS confidence
		948	.	950	.	.	.	.	.	.	.	.	.	960	.	.	.	.	.	.	.	.	.	970	.	.	.	.	.	.	.	.	.	980		.	.	.	.	.	.	.	.	.	990	.	.	.	.	.	.	.	.	.	1000	.	.	.	.	.	.	.	.	.	1010	.	.	.	.	.	.	.	.	.	1020	.	.	.	.	.	.
		81	.	.	.	.	.
Predicted Secondary structure								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		L	N	D	D	L	T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		N	T	P	L	X	L	A	V	L	A	R	R	R	R	L	V	A	Y	L	X	K	A	G	A	D	P	T	I	Y	N	K	S	E	R	S	A	L	H	Q	A	A	A	N	R	D	F	G	X	X	V	Y	X	L	N	S	T	K	L	K	G	D	I	E	E	L	D	R	N	G	X	T	A	L	X	I	V	A	H	N	E
Template Known Secondary structure												T											T	T			S					T	T											T	T									T	T	S						T	T	S				T	T	S										S
Template Predicted Secondary structure
Template SS confidence
		1095	.	.	.	.	1100	.	.	.	.	.	.	.	.	.	1110	.	.	.	.	.	.	.	.	.	1120	.	.	.	.	.	.	.	.	.	1130	.	.	.	.	.	.	.	.	.	1140	.	.	.	.	.	.	.	.	.	1150	.	.	.	.	.	.	.	.	.	1160	.	.	.	.	.	.	.	.	.	1170	.	.	.	.
											87	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	L	L	R	I	I	L	P	A	K	P	D	L	N	C	V	T	R	F	G	G	V	G	L	T	P	A	C	E	K	G	H	L	S	I	V	K	E	L	L	A	H	T	E	I	N	V	N	Q	T	N	H	V	G	W	T	P	L	L	E	A	I	V	L	N	D	G	G	I	K	Q	Q
Query Conservation		.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		G	R	D	Q	V	A	S	A	K	L	L	V	E	K	G	A	K	V	D	Y	D	G	A	A	R	K	D	S	E	K	Y	K	G	R	T	A	L	H	Y	A	A	Q	V	S	N	X	P	I	V	K	Y	L	V	G	E	K	G	S	N	K	D	K	Q	D	E	D	G	K	T	P	I	X	L	A	A	Q	E	G	R	I
Template Known Secondary structure		S	T	T												T			S	S			S	G	G	G	T	S	S	S	S						T						S	S													S				T	T				T	T												T
Template Predicted Secondary structure
Template SS confidence
		1175	.	.	.	.	1180	.	.	.	.	.	.	.	.	.	1190	.	.	.	.	.	.	.	.	.	1200	.	.	.	.	.	.	.	.	.	1210	.	.	.	.	.	.	.	.	.	1220	.	.	.	.	.	.	.	.	.	1230	.	.	.	.	.	.	.	.	.	1240	.	.	.	.	.	.	.	.	.	1250	.	.	.	.
		158	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	I	V	Q	L	L	L	E	H	G	A	S	P	H	L	T	D	K	Y	G	K	T	P	L	E	L	A	R	E	R	G	F	E	E	I	A	Q	L	L	I	A
Query Conservation
Alig confidence
Template Conservation
Template Sequence		E	V	V	X	Y	L	I	Q	Q	G	A	S	V	E	A	V	D	A	T	D	H	T	A	R	Q	L	A	Q	A	N	N	H	H	N	I	V	D	I	F	D	R
Template Known Secondary structure										T	T			S	S				S	S	S										T	T										T
Template Predicted Secondary structure
Template SS confidence
		1255	.	.	.	.	1260	.	.	.	.	.	.	.	.	.	1270	.	.	.	.	.	.	.	.	.	1280	.	.	.	.	.	.	.	.	.	1290	.	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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