Job Description P0ACU2 Confidence 99.88% Date Thu Jan 5 11:19:03 GMT 2012 Rank 44 Aligned Residues 196 % Identity 16% Template c2uxoB_ PDB info PDB header:transcription Chain: B: PDB Molecule:hth-type transcriptional regulator ttgr; PDBTitle: ttgr in complex with tetracycline Resolution 2.7 Å

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		13	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.			.	.	.	.	.	90
Predicted Secondary structure																																																																										.	.
Query SS confidence																																																																										.	.
Query Sequence		S	R	A	V	S	A	K	K	K	A	I	L	S	A	A	L	D	T	F	S	Q	F	G	F	H	G	T	R	L	E	Q	I	A	E	L	A	G	V	S	K	T	N	L	L	Y	Y	F	P	S	K	E	A	L	Y	I	A	V	L	R	Q	I	L	D	I	W	L	A	P	L	K	A	F	.	.	R	E	D	F	A	P
Query Conservation																																																																										.	.
Alig confidence																																																																										.	.
Template Conservation
Template Sequence		K	E	E	A	Q	E	T	R	A	Q	I	I	E	A	A	E	R	A	F	Y	K	R	G	V	A	R	T	T	L	A	D	I	A	E	L	A	G	V	T	R	G	A	I	Y	W	H	F	N	N	K	A	E	L	V	Q	A	L	L	D	S	L	H	E	T	H	D	H	L	A	R	A	S	E	S	E	D	E	V	D	P
Template Known Secondary structure				S		S																			S	T	T											T	S							T	T		S	S												T	T	G	G	G										T	T		S
Template Predicted Secondary structure
Template SS confidence
		6	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.
		91	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.						.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.		.	.	.	.	160	.	.	.	.
Predicted Secondary structure																													.	.	.	.	.																																							.
Query SS confidence																													.	.	.	.	.																																							.
Query Sequence		L	A	A	I	K	E	Y	I	R	L	K	L	E	V	S	R	D	Y	P	Q	A	S	R	L	F	C	M	.	.	.	.	.	E	M	L	A	G	A	P	L	L	M	D	E	L	T	G	D	L	K	A	L	I	D	E	K	S	A	L	I	A	G	W	V	K	S	G	K	L	A	.	P	I	D	P	Q	H	L	I	F
Query Conservation																													.	.	.	.	.																																							.
Alig confidence																													.	.	.	.	.																																							.
Template Conservation
Template Sequence		L	G	C	M	R	K	L	L	L	Q	V	F	N	E	L	V	L	D	A	R	T	R	R	I	N	E	I	L	H	H	K	C	E	F	T	D	D	M	C	E	I	R	Q	Q	R	Q	S	A	V	L	D	C	H	K	G	I	T	L	A	L	A	N	A	V	R	R	G	Q	L	P	G	E	L	D	A	E	R	A	A	V
Template Known Secondary structure																																S				B	T	T	B																												T	T	S	S		S	S
Template Predicted Secondary structure
Template SS confidence
		86	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.
		165	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		M	I	W	A	S	T	Q	H	Y	A	D	F	A	P	Q	V	E	A	V	T	G	A	T	L	R	D	E	V	F	F	N	Q	T	V	E	N	V	Q	R	I	I	I	E	G	I	R	P	R
Query Conservation
Alig confidence																.	.	.	.
Template Conservation																.	.	.	.
Template Sequence		A	M	F	A	Y	V	D	G	L	I	R	R	W	L	.	.	.	.	L	L	P	D	S	V	D	L	L	G	D	V	E	K	W	V	D	T	G	L	D	M	L	R	L	S	P	A	L	R
Template Known Secondary structure																.	.	.	.			G	G	G			T	T	T	T																G	G	G
Template Predicted Secondary structure																.	.	.	.
Template SS confidence
		166	.	.	.	170	.	.	.	.	.	.	.	.	.					180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions