Job Description P0ACU2 Confidence 99.89% Date Thu Jan 5 11:19:03 GMT 2012 Rank 34 Aligned Residues 183 % Identity 19% Template c1jumB_ PDB info PDB header:transcription Chain: B: PDB Molecule:hypothetical transcriptional regulator in qaca PDBTitle: crystal structure of the multidrug binding transcriptional2 repressor qacr bound to the natural drug berberine Resolution 2.98 Å

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		19	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.		.	.	.	.	.	90	.	.	.	.	.	.	.
Predicted Secondary structure																																																																				.
Query SS confidence																																																																				.
Query Sequence		K	K	K	A	I	L	S	A	A	L	D	T	F	S	Q	F	G	F	H	G	T	R	L	E	Q	I	A	E	L	A	G	V	S	K	T	N	L	L	Y	Y	F	P	S	K	E	A	L	Y	I	A	V	L	R	Q	I	L	D	I	W	L	A	P	L	K	A	F	.	R	E	D	F	A	P	L	A	A	I	K	E	Y
Query Conservation																																																																				.
Alig confidence																																																																				.
Template Conservation
Template Sequence		L	K	D	K	I	L	G	V	A	K	E	L	F	I	K	N	G	Y	N	A	T	T	T	G	E	I	V	K	L	S	E	S	S	K	G	N	L	Y	Y	H	F	K	T	K	E	N	L	F	L	E	I	L	N	I	E	E	S	K	W	Q	E	Q	W	K	K	E	Q	I	K	A	K	T	N	R	E	K	F	Y	L	Y
Template Known Secondary structure																	T		T	T	T	S									T	T										S		S																								T	T	S			S
Template Predicted Secondary structure
Template SS confidence
		3	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.
		98	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.		.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.
Predicted Secondary structure																			.
Query SS confidence																			.
Query Sequence		I	R	L	K	L	E	V	S	R	D	Y	P	Q	A	S	R	L	.	F	C	M	E	M	L	A	G	A	P	L	L	M	D	E	L	T	G	D	L	K	A	L	I	D	E	K	S	A	L	I	A	G	W	V	K	S	G	K	L	A	P	I	D	P	Q	H	L	I	F	M	I	W	A	S	T	Q	H	Y	A	D	F
Query Conservation																			.
Alig confidence																			.																																																												.	.	.
Template Conservation																																																																															.	.	.
Template Sequence		N	E	L	S	L	T	T	E	Y	Y	Y	P	L	Q	N	A	I	I	E	F	Y	T	E	Y	Y	K	T	N	S	I	N	E	K	M	N	K	L	E	N	K	Y	I	D	A	Y	H	V	I	F	K	E	G	N	L	N	G	E	W	S	I	N	D	V	N	A	V	S	K	I	A	A	N	A	V	N	G	I	.	.	.
Template Known Secondary structure									S	S	S	G	G	G										T	T	T	T	S	S	T	T												T														S	S				S																	.	.	.
Template Predicted Secondary structure																																																																															.	.	.
Template SS confidence
		83	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.
		177	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Predicted Secondary structure
Query SS confidence
Query Sequence		A	P	Q	V	E	A	V	T	G	A	T	L	R	D	E	V	F	F	N	Q	T	V	E	N	V	Q	R	I	I	I	E	G	I	R
Query Conservation
Alig confidence		.	.	.	.	.	.
Template Conservation		.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	V	T	F	T	H	E	Q	N	I	N	E	R	I	K	L	M	N	K	F	S	Q	I	F	L	N	G	L	S
Template Known Secondary structure		.	.	.	.	.	.			T	T	T	T	S
Template Predicted Secondary structure		.	.	.	.	.	.
Template SS confidence
								160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions