Job Description P10903 Confidence 99.97% Date Thu Jan 5 11:32:22 GMT 2012 Rank 5 Aligned Residues 410 % Identity 10% Template c2xutC_ PDB info PDB header:transport protein Chain: C: PDB Molecule:proton/peptide symporter family protein; PDBTitle: crystal structure of a proton dependent oligopeptide (pot)2 family transporter. Resolution 3.62 Å

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		39	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.						.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.		100	.	.	.	.	.	.	.	.	.	110	.	.
Predicted Secondary structure																													.	.	.	.	.																																			.
Query SS confidence																													.	.	.	.	.																																			.
Query Sequence		W	I	S	V	P	C	L	L	L	A	F	C	V	W	M	L	F	S	A	V	A	V	N	L	P	K	V	.	.	.	.	.	G	F	N	F	T	T	D	Q	L	F	M	L	T	A	L	P	S	V	S	G	A	L	L	R	V	P	Y	S	F	M	V	P	I	F	.	G	G	R	R	W	T	A	F	S	T	G	I	L
Query Conservation																													.	.	.	.	.																																			.
Alig confidence																													.	.	.	.	.																																			.
Template Conservation
Template Sequence		Y	I	I	A	S	E	A	C	E	R	F	S	F	Y	G	M	R	N	I	L	T	P	F	L	M	T	A	L	L	L	S	I	P	E	E	L	R	G	A	V	A	K	D	V	F	H	S	F	V	I	G	V	Y	F	F	P	L	L	G	G	W	I	A	D	R	F	F	G	K	Y	N	T	I	L	W	L	S	L	I	Y
Template Known Secondary structure																												S		S	S			S	S	S	T	T	T	T	T															T									T	T	S	S		S
Template Predicted Secondary structure
Template SS confidence
		16	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.
		113	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.		.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.				.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.
Predicted Secondary structure																																	.																							.	.	.
Query SS confidence																																	.																							.	.	.
Query Sequence		I	I	P	C	V	W	L	G	F	A	V	Q	D	T	S	T	P	Y	S	V	F	I	I	I	S	L	L	C	G	F	A	.	G	A	N	F	A	S	S	M	A	N	I	S	F	F	F	P	K	Q	K	Q	G	G	.	.	.	A	L	G	L	N	G	G	L	G	N	M	G	V	S	V	M	Q	L	V	A	P	L	V
Query Conservation																																	.																							.	.	.
Alig confidence															.	.	.	.															.																							.	.	.
Template Conservation															.	.	.	.
Template Sequence		C	V	G	H	A	F	L	A	I	F	E	H	S	.	.	.	.	V	Q	G	F	Y	T	G	L	F	L	I	A	L	G	S	G	G	I	K	P	L	V	S	S	F	M	G	D	Q	F	D	Q	S	N	K	S	L	A	Q	K	A	F	D	M	F	Y	F	T	I	N	F	G	S	F	F	A	S	L	S	M	P	L	L
Template Known Secondary structure											T	S	S		.	.	.	.																	T	T											T		S	T	T	T	T	T																							T	S	T
Template Predicted Secondary structure															.	.	.	.
Template SS confidence
		96	.	.	.	100	.	.	.	.	.	.	.	.					.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.
		189	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	S	L	S	I	F	A	V	F	G	S	Q	G	V	K	Q	P	D	G	T	E	L	Y	L	A	N	A	S	W	I	W	V	P	F	L	A	I	F	T	I	A	A	W	F	G	M	N	D	L	A	T	S	K	A	S	I	K	E	Q	L	P	V	L	K	R	G	H	L	W	I	M	S	L	L	Y	L	A	T	F	G
Query Conservation
Alig confidence
Template Conservation
Template Sequence		L	K	N	F	G	A	A	V	A	F	G	I	P	G	V	L	M	F	V	A	T	V	F	F	W	L	G	R	K	R	Y	I	H	M	P	V	E	G	K	G	N	I	G	L	V	L	A	L	I	G	G	V	S	A	A	Y	A	L	V	N	I	P	T	L	G	I	V	A	G	L	C	C	A	M	V	L	V	M	G	F
Template Known Secondary structure				T	S																						S	S	S	S	S							T	T																			T	G	G	G	T	T	T	T		S	S
Template Predicted Secondary structure
Template SS confidence
		172	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.
		269	270	.	.	.	.	.	.																.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.
Predicted Secondary structure										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		S	F	I	G	F	S	A	G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	F	A	M	L	S	K	T	Q	F	P	D	V	Q	I	L	Q	Y	A	F	F	G	P	F	I	G	A	L	A	R	S	A	G	G	A	L	S	D	R	L	G	G	T	R	V	T	L	V	N	F	I	L	M	A	I	F	S	G
Query Conservation										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		V	G	A	G	A	S	L	Q	L	E	R	A	R	K	S	H	P	D	A	A	V	D	G	V	R	S	V	L	R	I	L	V	L	F	A	L	V	T	P	F	W	S	L	F	D	Q	K	A	S	T	W	I	L	Q	A	N	D	M	V	K	P	Q	W	F	E	P	A	M	M	Q	A	L	N	P	L	L	V	M	L	L
Template Known Secondary structure				T	G	G	G	T					S			S			S	S	S	S	T	T	T	T	T									T	T	S					T	T	T	S	S	T	T	T									S				S	S	S							T	T	S	G	G	G
Template Predicted Secondary structure
Template SS confidence
		272	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.
		334	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.							.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.
Predicted Secondary structure																																.	.	.	.	.	.
Query SS confidence																																.	.	.	.	.	.
Query Sequence		L	L	F	L	T	L	P	T	D	G	Q	G	G	S	F	M	A	F	F	A	V	F	L	A	L	F	L	T	A	G	.	.	.	.	.	.	L	G	S	G	S	T	F	Q	M	I	S	V	I	F	R	K	L	T	M	D	R	V	K	A	E	G	G	S	D	E	R	A	M	R	E	A	A	T	D	T	A	A	A	L
Query Conservation																																.	.	.	.	.	.
Alig confidence																																.	.	.	.	.	.
Template Conservation
Template Sequence		I	P	F	N	N	F	V	T	A	L	R	K	M	G	A	G	I	A	I	T	G	L	S	W	I	V	V	G	T	I	Q	L	M	M	D	G	G	S	A	L	S	I	F	W	Q	I	L	P	Y	A	L	L	T	F	G	E	V	L	V	S	A	T	G	L	E	F	A	Y	S	Q	A	P	K	A	M	K	G	T	I	M
Template Known Secondary structure		G	G	G	T	T	T									T											T	T	T	T	T	T	T	T	T	T	T	T					S																						T	T	T							T	T			T	T	T
Template Predicted Secondary structure
Template SS confidence
		352	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.
		408	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.											.	.	440	.	.	.	.	.	.	.	.	.	450	.	.
Predicted Secondary structure																																.	.	.	.	.	.	.	.	.	.
Query SS confidence																																.	.	.	.	.	.	.	.	.	.
Query Sequence		G	F	I	S	A	I	G	A	I	G	G	F	F	I	P	K	A	F	G	S	S	L	A	L	T	G	S	P	V	G	.	.	.	.	.	.	.	.	.	.	A	M	K	V	F	L	I	F	Y	I	A	C	V	V	I
Query Conservation																																.	.	.	.	.	.	.	.	.	.
Alig confidence																																.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		S	F	W	T	L	S	V	T	V	G	N	L	W	V	L	L	A	N	V	S	V	K	S	P	T	V	T	E	Q	I	V	Q	T	G	M	S	V	T	A	F	Q	M	F	F	F	A	G	F	A	I	L	A	A	I	V
Template Known Secondary structure					G	G	G															T	T	S												S
Template Predicted Secondary structure
Template SS confidence
		444	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.