Job Description P46849 Confidence 100.00% Date Thu Jan 5 12:04:20 GMT 2012 Rank 2 Aligned Residues 324 % Identity 18% Template c3pqvD_ PDB info PDB header:unknown function Chain: D: PDB Molecule:rcl1 protein; PDBTitle: cyclase homolog Resolution 2.61 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		15	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	G	Q	I	L	R	S	A	L	S	L	S	M	I	T	G	Q	P	F	T	I	T	S	I	R	A	G	R	A	K	P	G	L	L	R	Q	H	L	T	A	V	K	A	A	T	E	I	C	G	A	T	V	E	G	A	E	L	G	S	Q	R	L	L	F	R	P	G	T	V	R	G	G	D	Y	R	F	A	I	G	S
Query Conservation
Alig confidence
Template Conservation
Template Sequence		G	S	R	N	F	R	L	R	V	V	M	A	T	L	S	G	K	A	I	K	I	E	K	I	R	S	D	D	L	N	P	G	L	K	D	Y	E	V	S	F	L	R	L	M	E	A	V	T	N	G	S	S	I	E	I	S	Y	T	G	T	T	V	I	F	R	P	G	I	I	T	G	G	S	Y	T	H	Q	C	P	N
Template Known Secondary structure		S	S	T	T												T								T	T	S	S	S	S	S		S																		S							S	S	S	S																				T
Template Predicted Secondary structure
Template SS confidence
		12	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.
		95	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.		150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.
Predicted Secondary structure																																																									.
Query SS confidence																																																									.
Query Sequence		A	G	S	C	T	L	V	L	Q	T	V	L	P	A	L	W	F	A	D	G	P	S	R	V	E	V	S	G	G	T	D	N	P	S	A	P	P	A	D	F	I	R	R	V	L	E	P	L	L	A	K	I	G	I	H	.	Q	Q	T	T	L	L	R	H	G	F	Y	P	A	G	G	G	V	V	A	T	E	V	S	P
Query Conservation																																																									.
Alig confidence																																																									.
Template Conservation
Template Sequence		S	K	P	V	G	Y	F	A	E	P	M	L	Y	L	A	P	F	S	K	K	K	F	S	I	L	F	R	G	I	T	S	S	H	N	D	A	G	I	D	A	I	K	W	G	L	M	P	I	M	E	K	F	G	V	R	E	C	A	L	H	T	L	K	R	G	S	P	P	L	G	G	G	E	V	H	L	V	V	D	S
Template Known Secondary structure		T	S													G	G	G		S	S													S	S	S									T	T							T	T														T	T	T
Template Predicted Secondary structure
Template SS confidence
		92	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.
			174	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.								.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.
Predicted Secondary structure		.																																																					.	.	.	.	.	.	.
Query SS confidence		.																																																					.	.	.	.	.	.	.
Query Sequence		.	V	A	S	F	N	T	L	Q	L	G	E	R	G	N	I	V	Q	M	R	G	E	V	L	L	A	G	V	P	R	H	V	A	E	R	E	I	A	T	L	A	G	S	F	S	L	H	E	Q	N	I	H	N	.	.	.	.	.	.	.	L	P	R	D	Q	G	P	G	N	T	V	S	L	E	V	E	S	E	N	I
Query Conservation		.																																																					.	.	.	.	.	.	.
Alig confidence		.																																																					.	.	.	.	.	.	.
Template Conservation
Template Sequence		L	I	A	Q	P	I	T	M	H	A	L	D	K	T	M	I	S	S	I	R	G	V	S	Y	S	T	R	V	S	P	S	L	V	N	R	M	I	D	G	A	K	K	V	L	K	S	A	S	C	E	V	N	I	T	A	D	V	W	R	G	E	N	S	G	K	S	P	G	W	G	L	T	L	V	A	E	N	K	Q	G
Template Known Secondary structure				S	S								S					S										S	S		T															T	T	S	S	S											G	G	G	G		S	S												T	T	S
Template Predicted Secondary structure
Template SS confidence
		172	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.
			246	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.					.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320
Predicted Secondary structure		.																																																			.	.	.	.
Query SS confidence		.																																																			.	.	.	.
Query Sequence		.	T	E	R	F	F	V	V	G	E	K	R	V	S	A	E	V	V	A	A	Q	L	V	K	E	V	K	R	Y	L	A	S	T	A	A	V	G	E	Y	L	A	D	Q	L	V	L	P	M	A	L	A	.	.	.	.	G	A	G	E	F	T	V	A	H	P	S	C	H	L	L	T	N	I	A	V	V	E	R	F	L
Query Conservation		.																																																			.	.	.	.
Alig confidence		.																																																			.	.	.	.
Template Conservation
Template Sequence		W	R	I	F	S	E	A	I	G	D	A	G	D	V	P	E	D	I	G	A	S	V	A	Y	H	L	L	E	E	I	S	K	S	G	V	V	G	R	N	Q	L	P	L	T	I	L	Y	M	I	I	G	K	E	D	I	G	R	L	R	I	T	K	D	Q	I	D	E	R	F	V	W	L	L	R	D	I	K	K	V	F
Template Known Secondary structure												T	T																						S	S	S		G	G	G										T	S		S	S								G	G	G	S	S
Template Predicted Secondary structure
Template SS confidence
		252	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.
		321	.	.	.	.	.	.	.	.	330				.	.	.	.	.	.	.	.
Predicted Secondary structure												.	.	.
Query SS confidence												.	.	.
Query Sequence		P	V	R	F	S	L	I	E	T	D	.	.	.	G	V	T	R	V	S	I	E
Query Conservation												.	.	.
Alig confidence												.	.	.
Template Conservation
Template Sequence		G	T	E	I	L	L	K	P	V	D	D	N	T	T	D	L	I	A	T	I	K
Template Known Secondary structure											S	S	S	S
Template Predicted Secondary structure
Template SS confidence
		332	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions