Job Description P60340 Confidence 100.00% Date Thu Jan 5 12:06:43 GMT 2012 Rank 6 Aligned Residues 263 % Identity 28% Template c3uaiA_ PDB info PDB header:isomerase/chaperone Chain: A: PDB Molecule:h/aca ribonucleoprotein complex subunit 4; PDBTitle: structure of the shq1-cbf5-nop10-gar1 complex from saccharomyces2 cerevisiae Resolution 3.06 Å

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		12	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.
Predicted Secondary structure
Query SS confidence
Query Sequence		N	G	V	L	L	L	D	K	P	Q	G	M	S	S	N	D	A	L	Q	K	V	K	R	I	Y	N	A	N	R	A	G	H	T	G	A	L	D	P	L	A	T	G	M	L	P	I	C	L	G	E	A	T	K	F	S	Q	Y	L	L	D	S	D	K	R	Y	R	V	I	A	R	L	G	Q	R	T	D	T	S	D	A
Query Conservation
Alig confidence																																																																																	.
Template Conservation																																																																																	.
Template Sequence		S	G	V	I	N	L	D	K	P	S	N	P	S	S	H	E	V	V	A	W	I	K	R	I	L	R	C	E	K	T	G	H	S	G	T	L	D	P	K	V	T	G	C	L	I	V	C	I	D	R	A	T	R	L	V	K	S	Q	Q	G	A	G	K	E	Y	V	C	I	V	R	L	H	D	A	L	K	D	E	K	.
Template Known Secondary structure		T									S	S	S																S					S			S	S	S	S										G	G	G	G	G	G						S	S											S	S			S	S	T		.
Template Predicted Secondary structure																																																																																	.
Template SS confidence
		59	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.
		92	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.			.	.	.	.
Predicted Secondary structure																																																																												.	.
Query SS confidence																																																																												.	.
Query Sequence		D	G	Q	I	V	E	E	R	P	V	T	F	S	A	E	Q	L	A	A	A	L	D	T	F	R	G	D	I	E	Q	I	P	S	M	Y	S	A	L	K	Y	Q	G	K	K	L	Y	E	Y	A	R	Q	G	I	E	V	P	R	E	A	R	P	I	T	V	Y	E	L	L	F	I	R	H	E	G	.	.	N	E	L	E
Query Conservation																																																																												.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.													.	.
Template Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	D	L	G	R	S	L	E	N	L	T	G	A	L	F	Q	R	P	P	L	K	R	Q	L	R	V	R	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	T	I	Y	E	S	N	L	I	E	F	D	N	K	R	N	L	G	V
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.									T																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.												T	T	T	T
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
																	138	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.																						.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.
		170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.		.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.
Predicted Secondary structure																																													.
Query SS confidence																																													.
Query Sequence		L	E	I	H	C	S	K	G	T	Y	I	R	T	I	I	D	D	L	G	E	K	L	G	C	G	A	H	V	I	Y	L	R	R	L	A	V	S	K	Y	P	V	E	R	.	M	V	T	L	E	H	L	R	E	L	V	E	Q	A	E	Q	Q	D	I	P	A	A	E	L	L	D	P	L	L	M	P	M	D	S	P	A
Query Conservation																																													.
Alig confidence																																													.																			.	.
Template Conservation																																																																.	.
Template Sequence		F	W	A	S	C	E	A	G	T	Y	M	R	T	L	C	V	H	L	G	M	L	L	G	V	G	G	H	M	Q	E	L	R	R	V	R	S	G	A	L	S	E	N	D	N	M	V	T	L	H	D	V	M	D	A	Q	W	V	Y	D	N	T	R	.	.	D	E	S	Y	L	R	S	I	I	Q	P	L	E	T	L	L
Template Known Secondary structure								T	T															S	S													T	T			T	T	S	S		B																	.	.			T	T					S			G	G	G	G	G
Template Predicted Secondary structure																																																																.	.
Template SS confidence
		186	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.			.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.
		249	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.							.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.										.	300	.	.		.	.	.	.	.	.	.	310	.	.
Predicted Secondary structure																												.	.	.	.	.	.																									.	.	.	.	.	.	.	.	.					.
Query SS confidence																												.	.	.	.	.	.																									.	.	.	.	.	.	.	.	.					.
Query Sequence		S	D	Y	P	V	V	N	L	P	L	T	S	S	V	Y	F	K	N	G	N	P	V	R	T	S	G	.	.	.	.	.	.	A	P	L	E	G	L	V	R	V	T	E	G	E	N	G	K	F	I	G	M	G	E	I	D	.	.	.	.	.	.	.	.	.	D	E	G	R	.	V	A	P	R	R	L	V	V	E	Y
Query Conservation																												.	.	.	.	.	.																									.	.	.	.	.	.	.	.	.					.
Alig confidence																												.	.	.	.	.	.																									.	.	.	.	.	.	.	.	.					.
Template Conservation
Template Sequence		V	G	Y	K	R	I	V	V	K	D	S	A	V	N	A	V	C	Y	G	A	K	L	M	I	P	G	L	L	R	Y	E	E	G	I	E	L	Y	D	E	I	V	L	I	T	T	K	G	E	A	I	A	V	A	I	A	Q	M	S	T	V	D	L	A	S	C	D	H	G	V	V	A	S	V	K	R	C	I	M	E	R
Template Known Secondary structure		T	T	S							G	G	G					T	T	T					G	G	G						S	S			T	T								T	T											S									S	S											S		T
Template Predicted Secondary structure
Template SS confidence
		264	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.
		313
Predicted Secondary structure
Query SS confidence
Query Sequence		P
Query Conservation
Alig confidence
Template Conservation
Template Sequence		D
Template Known Secondary structure		T
Template Predicted Secondary structure
Template SS confidence
		344

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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