Job Description P60340 Confidence 5.67% Date Thu Jan 5 12:06:43 GMT 2012 Rank 99 Aligned Residues 66 % Identity 14% Template c3iz6D_ PDB info PDB header:ribosome Chain: D: PDB Molecule:40s ribosomal protein s4 (s4e); PDBTitle: localization of the small subunit ribosomal proteins into a 5.5 a2 cryo-em map of triticum aestivum translating 80s ribosome Resolution 5.50 Å

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		243	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.																			.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.
Predicted Secondary structure																																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		P	M	D	S	P	A	S	D	Y	P	V	V	N	L	P	L	T	S	S	V	Y	F	K	N	G	N	P	V	R	T	S	G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	A	P	L	E	G	L	V	R	V	T	E	G	E	N	G	K	F	I	G	M	G	E	I	D	D	E	G	R	V	A
Query Conservation																																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		P	L	I	L	I	I	R	N	R	L	K	Y	A	L	T	Y	R	E	V	I	S	I	L	M	Q	R	H	V	L	V	D	G	K	V	R	T	D	K	T	Y	P	A	G	F	M	D	V	I	S	I	P	K	T	G	E	N	Y	R	L	L	Y	D	T	K	G	R	F	R	L	Q	S	V	K	D	E	D	A	K	F	K
Template Known Secondary structure												T	T	S	S		S	S	S	T						T	T					T	T						T	T					T	T							S	S										T	T	S													T
Template Predicted Secondary structure
Template SS confidence
		43	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.
		305	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		P	R	R	L
Query Conservation
Alig confidence
Template Conservation
Template Sequence		L	C	K	V
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		123	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions