 |
Job Description | P60340 | Confidence | 10.03% | Date | Thu Jan 5 12:06:43 GMT 2012 |
Rank | 69 | Aligned Residues | 92 |
% Identity | 12% | Template | c2owlA_ |
PDB info |
PDB header:recombination | Chain: A: PDB Molecule:recombination-associated protein rdgc; |
PDBTitle: crystal structure of e. coli rdgc
|
Resolution | 2.40 Å |
|
 |
  |   |
12 | . | . | . | . | . | . | . | 20 | . | . | . | . | . | . | . | . | . | 30 | . | . | . | . | . | . | . | . | . | 40 | . | . | . | . | . | . | . | . | . | 50 | . | . | . | . | . | . | . | . | . | 60 | . | . | . | . | . | . | . | . | . | 70 | . | . | . | . | . | . | . | . | . | 80 | . | . | . | . | . | . | . | . | . | 90 | . |
Predicted Secondary structure |   |
|  |  |  |  |  |
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |
|
|
|
|
|
|
|
|
|
|
|  |  |  |  |  |
|
|  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
N | G | V | L | L | L | D | K | P | Q | G | M | S | S | N | D | A | L | Q | K | V | K | R | I | Y | N | A | N | R | A | G | H | T | G | A | L | D | P | L | A | T | G | M | L | P | I | C | L | G | E | A | T | K | F | S | Q | Y | L | L | D | S | D | K | R | Y | R | V | I | A | R | L | G | Q | R | T | D | T | S | D | A |
Query Conservation |   |
  |
|   |
|   |
|   |
|
|   |
|   |
|
|   |   |
|
|   |   |
|
|   |   |   |   |   |
|
|
|
|
|   |
|
|
|
|
|   |
|
|
|
|
|   |
|   |
|
|   |
|
|
|
|   |   |   |   |   |   |   |   |
|   |
|   |
|   |   |   |
|
|   |   |
|
|
|   |
|   |
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . | . | . |
|
|
|
|
|
|
|
| . | . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
  |   |   |
|   |
|
|
|
|
|   |
|   |
|
|   |   |
|   |   |
|
|
|
|
|
|
|
|
|
|   | . | . | . | . | . | . |
|   |   |   |   |   |   |
| . | . | . | . | . |   |   |   |
|
|   |
|
|   |   |   |   |   |
|   |   |
|   |
|   |   |   |   |
|
|   |   |   |   |
|
Template Sequence |   |
N | G | L | I | X | V | D | C | A | S | A | K | K | A | E | D | T | L | A | L | L | R | K | S | L | G | S | L | P | V | V | . |
. |
. |
. |
. |
. |
P | L | S | X | E | N | P | I | . |
. |
. |
. |
. |
E | L | T | L | T | E | W | V | R | S | G | S | A | A | Q | G | F | Q | L | L | D | E | A | E | L | K | S | L | L | E |
Template Known Secondary structure |   |
T | T |  |  |  |  |
|
| S |
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | S |
|
|
|  |  | . | . | . | . | . | . |  |
|
| B | S | S |
|  | . | . | . | . | . |  |  |  |  |  |  |  |  |  |  | T |
|
| S | T | T |  |  |  |  |  |  |  |  |  |  |
| S | S | T |
Template Predicted Secondary structure |   |
|
|  |  |  |  |  |
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  | . | . | . | . | . | . |  |
|
|
|
|
|
|  | . | . | . | . | . |  |  |  |  |  |  |  |  |  |
|
|
|
|
|
|
|
|
|
|
|
|
|  |  |  |  |  |
|
|
|
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
134 | . | . | . | . | . | 140 | . | . | . | . | . | . | . | . | . | 150 | . | . | . | . | . | . | . | . | . | 160 | . | . | . | . | |
|
|
|
|
|
. | . | . | . | . | 170 | . | . | |
|
|
|
|
. | . | . | . | . | . | . | 180 | . | . | . | . | . | . | . | . | . | 190 | . | . | . | . | . | . | . | . | . | 200 | . | . |
  |
  |   |
92 | . | . | . | . | . | . | . | 100 | . | . | . | . | . | . | . | . | . | 110 | . | . | . | . |
Predicted Secondary structure |   |
|
|
|  |  |  |  |
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
D | G | Q | I | V | E | E | R | P | V | T | F | S | A | E | Q | L | A | A | A | L | D | T |
Query Conservation |   |
  |
|   |
|   |   |   |   |   |   |   |   |
|   |
|   |
|   |   |   |
|   |   |
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
  |   |   |   |
|
|   |
|   |   |   |
|   |   |   |
|
|   |   |
|
|   |   |
Template Sequence |   |
D | G | G | V | I | R | A | K | K | Q | D | L | T | S | E | E | I | T | N | H | I | E | A |
Template Known Secondary structure |   |
T | S |
|  |  |  |  |
| S |
|
| S | S | S |  |  |  |  |  |  |  |  | T |
Template Predicted Secondary structure |   |
|
|
|  |  |  |  |
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |
|
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
203 | . | . | . | . | . | . | 210 | . | . | . | . | . | . | . | . | . | 220 | . | . | . | . | . |
  |
No model constructed - rank, confidence too low
Phyre is for academic use only
Please cite: Protein structure prediction on
the web: a case study using the Phyre server |
Kelley LA and Sternberg MJE. Nature Protocols
4, 363 - 371 (2009) [pdf] [Import into BibTeX] |
  |
|
|