Job Description P60340 Confidence 100.00% Date Thu Jan 5 12:06:43 GMT 2012 Rank 5 Aligned Residues 268 % Identity 29% Template c2ey4A_ PDB info PDB header:isomerase/biosynthetic protein Chain: A: PDB Molecule:probable trna pseudouridine synthase b; PDBTitle: crystal structure of a cbf5-nop10-gar1 complex Resolution 2.11 Å

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		7	.	.	10	.						.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.
Predicted Secondary structure							.	.	.	.	.
Query SS confidence							.	.	.	.	.
Query Sequence		R	G	R	D	I	.	.	.	.	.	N	G	V	L	L	L	D	K	P	Q	G	M	S	S	N	D	A	L	Q	K	V	K	R	I	Y	N	A	N	R	A	G	H	T	G	A	L	D	P	L	A	T	G	M	L	P	I	C	L	G	E	A	T	K	F	S	Q	Y	L	L	D	S	D	K	R	Y	R	V	I	A	R
Query Conservation							.	.	.	.	.
Alig confidence							.	.	.	.	.
Template Conservation
Template Sequence		E	K	R	P	I	E	M	H	I	Q	F	G	V	I	N	L	D	K	P	P	G	P	T	S	H	E	V	V	A	W	I	K	K	I	L	N	L	E	K	A	G	H	G	G	T	L	D	P	K	V	S	G	V	L	P	V	A	L	E	K	A	T	R	V	V	Q	A	L	L	P	A	G	K	E	Y	V	A	L	M	H
Template Known Secondary structure		G	G									T									S	S	S													T	T		S					S	S				T	T										G	G	G	G	G	G					T	T	S
Template Predicted Secondary structure
Template SS confidence
		39	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.
		82	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	G	Q	R	T	D	T	S	D	A	D	G	Q	I	V	E	E	R	P	V	T	F	S	A	E	Q	L	A	A	A	L	D	T	F	R	G	D	I	E	Q	I	P	S	M	Y	S	A	L	K	Y	Q	G	K	K	L	Y	E	Y	A	R	Q	G	I	E	V	P	R	E	A	R	P	I	T	V	Y	E	L	L	F	I
Query Conservation
Alig confidence					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		L	H	G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	D	V	P	E	D	K	I	I	Q	V	M	K	E	F	E	G	E	I	I	Q	R	P	P	L	R	S	A	V	K	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	R	R	L	R	T	R	K	V	Y	Y	I	E	V	L
Template Known Secondary structure			S	S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.													T	T	S									S	S	S		S		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		119	120	.																		.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150																		.	.	.	.	.	.	.	.	.	160	.	.	.	.
		162	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.		.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240
Predicted Secondary structure																																																						.
Query SS confidence																																																						.
Query Sequence		R	H	E	G	N	E	L	E	L	E	I	H	C	S	K	G	T	Y	I	R	T	I	I	D	D	L	G	E	K	L	G	C	G	A	H	V	I	Y	L	R	R	L	A	V	S	K	Y	P	V	E	R	M	.	V	T	L	E	H	L	R	E	L	V	E	Q	A	E	Q	Q	D	I	P	A	A	E	L	L	D	P	L
Query Conservation																																																						.
Alig confidence																																																						.																		.	.
Template Conservation																																																																								.	.
Template Sequence		E	I	E	G	R	D	V	L	F	R	V	G	V	E	A	G	T	Y	I	R	S	L	I	H	H	I	G	L	A	L	G	V	G	A	H	M	S	E	L	R	R	T	R	S	G	P	F	K	E	D	E	T	L	I	T	L	H	D	L	V	D	Y	Y	Y	F	W	K	E	D	G	.	.	I	E	E	Y	F	R	K	A
Template Known Secondary structure					T	T										T	T														T	S	S													T	T			S	S	T	T		B																	.	.								T
Template Predicted Secondary structure																																																																								.	.
Template SS confidence
		165	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.			.	.	.	.	.	240	.	.
		241	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.								.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.											.	300	.	.	.
Predicted Secondary structure																																			.	.	.	.	.	.	.																										.	.	.	.	.	.	.	.	.	.
Query SS confidence																																			.	.	.	.	.	.	.																										.	.	.	.	.	.	.	.	.	.
Query Sequence		L	M	P	M	D	S	P	A	S	D	Y	P	V	V	N	L	P	L	T	S	S	V	Y	F	K	N	G	N	P	V	R	T	S	.	.	.	.	.	.	.	G	A	P	L	E	G	L	V	R	V	T	E	G	E	N	G	K	F	I	G	M	G	E	I	D	.	.	.	.	.	.	.	.	.	.	D	E	G	R	V
Query Conservation																																			.	.	.	.	.	.	.																										.	.	.	.	.	.	.	.	.	.
Alig confidence																																			.	.	.	.	.	.	.													.													.	.	.	.	.	.	.	.	.	.
Template Conservation																																																						.
Template Sequence		I	Q	P	M	E	K	A	V	E	H	L	P	K	V	W	I	K	D	S	A	V	A	A	V	T	H	G	A	D	L	A	V	P	G	I	A	K	L	H	A	G	I	K	R	G	D	L	V	A	I	M	T	.	L	K	D	E	L	V	A	L	G	K	A	M	M	T	S	Q	E	M	L	E	K	T	K	G	I	A	V
Template Known Secondary structure		S			G	G	G	G	G	T	T	S														T	T	T					G	G	G						T	T			T	T								.	T	T	S									S	S										S	S
Template Predicted Secondary structure																																																						.
Template SS confidence
		243	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.		.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.
		304	.	.	.	.	.	310	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	P	R	R	L	V	V	E
Query Conservation
Alig confidence
Template Conservation
Template Sequence		D	V	E	K	V	F	M	P
Template Known Secondary structure								S
Template Predicted Secondary structure
Template SS confidence
		322	.	.	.	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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