Job Description P60340 Confidence 100.00% Date Thu Jan 5 12:06:43 GMT 2012 Rank 7 Aligned Residues 259 % Identity 31% Template c2apoA_ PDB info PDB header:isomerase/rna binding protein Chain: A: PDB Molecule:probable trna pseudouridine synthase b; PDBTitle: crystal structure of the methanococcus jannaschii cbf52 nop10 complex Resolution 1.95 Å

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		8	.	10	.						.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.
Predicted Secondary structure						.	.	.	.	.
Query SS confidence						.	.	.	.	.
Query Sequence		G	R	D	I	.	.	.	.	.	N	G	V	L	L	L	D	K	P	Q	G	M	S	S	N	D	A	L	Q	K	V	K	R	I	Y	N	A	N	R	A	G	H	T	G	A	L	D	P	L	A	T	G	M	L	P	I	C	L	G	E	A	T	K	F	S	Q	Y	L	L	D	S	D	K	R	Y	R	V	I	A	R	L
Query Conservation						.	.	.	.	.
Alig confidence						.	.	.	.	.
Template Conservation
Template Sequence		E	R	K	I	E	D	L	I	K	Y	G	V	V	V	V	D	K	P	R	G	P	T	S	H	E	V	S	T	W	V	K	K	I	L	N	L	D	K	A	G	H	G	G	T	L	D	P	K	V	T	G	V	L	P	V	A	L	E	R	A	T	K	T	I	P	M	W	H	I	P	P	K	E	Y	V	C	L	M	H	L
Template Known Secondary structure		G									T									S	S	S													T	T		S					S	S				T	T										G	G	G	G	G	G	G	G	G	T	T	S	S
Template Predicted Secondary structure
Template SS confidence
		36	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.
		83	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	Q	R	T	D	T	S	D	A	D	G	Q	I	V	E	E	R	P	V	T	F	S	A	E	Q	L	A	A	A	L	D	T	F	R	G	D	I	E	Q	I	P	S	M	Y	S	A	L	K	Y	Q	G	K	K	L	Y	E	Y	A	R	Q	G	I	E	V	P	R	E	A	R	P	I	T	V	Y	E	L	L	F	I	R
Query Conservation
Alig confidence										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		H	R	D	A	S	E	E	D	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	I	L	R	V	F	K	E	F	T	G	R	I	Y	Q	R	R	I	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	R	K	I	H	E	L	E	L	L	D
Template Known Secondary structure		S	S							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.									S									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		116	.	.	.	120	.	.	.																		.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140																													.	.	.	.	.	.	.	.	.	150
		163	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		H	E	G	N	E	L	E	L	E	I	H	C	S	K	G	T	Y	I	R	T	I	I	D	D	L	G	E	K	L	G	C	G	A	H	V	I	Y	L	R	R	L	A	V	S	K	Y	P	V	E	R	M	V	T	L	E	H	L	R	E	L	V	E	Q	A	E	Q	Q	D	I	P	A	A	E	L	L	D	P	L	L	M
Query Conservation
Alig confidence																																																																						.	.
Template Conservation																																																																						.	.
Template Sequence		K	D	G	K	D	V	L	F	R	V	K	C	Q	S	G	T	Y	I	R	K	L	C	E	D	I	G	E	A	L	G	T	S	A	H	M	Q	E	L	R	R	T	K	S	G	C	F	E	E	K	D	A	V	Y	L	Q	D	L	L	D	A	Y	V	F	W	K	E	D	G	.	.	D	E	E	E	L	R	R	V	I	K
Template Known Secondary structure				T	T										T	T														T	T	S													T	T			G	G	G		B														T	S		.	.
Template Predicted Secondary structure																																																																						.	.
Template SS confidence
		162	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.			230	.	.	.	.	.	.	.	.	.
		243	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.							.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.										.	.	300	.	.		.	.	.	.
Predicted Secondary structure																																	.	.	.	.	.	.																									.	.	.	.	.	.	.	.	.						.
Query SS confidence																																	.	.	.	.	.	.																									.	.	.	.	.	.	.	.	.						.
Query Sequence		P	M	D	S	P	A	S	D	Y	P	V	V	N	L	P	L	T	S	S	V	Y	F	K	N	G	N	P	V	R	T	S	.	.	.	.	.	.	G	A	P	L	E	G	L	V	R	V	T	E	G	E	N	G	K	F	I	G	M	G	E	I	.	.	.	.	.	.	.	.	.	D	D	E	G	R	.	V	A	P	R
Query Conservation																																	.	.	.	.	.	.																									.	.	.	.	.	.	.	.	.						.
Alig confidence																																	.	.	.	.	.	.																									.	.	.	.	.	.	.	.	.						.
Template Conservation
Template Sequence		P	M	E	Y	G	L	R	H	L	K	K	V	V	V	K	D	S	A	V	D	A	I	C	H	G	A	D	V	Y	V	R	G	I	A	K	L	S	K	G	I	G	K	G	E	T	V	L	V	E	T	L	K	G	E	A	V	A	V	G	K	A	L	M	N	T	K	E	I	L	N	A	D	K	G	V	A	V	D	V	E
Template Known Secondary structure			G	G	G	G	G	T	T	S															T	T					G	G	G						T	T			T	T								T	T	S									S	S									S	S	S
Template Predicted Secondary structure
Template SS confidence
		240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.
		307	.	.	310	.				.	.
Predicted Secondary structure							.	.	.
Query SS confidence							.	.	.
Query Sequence		R	L	V	V	E	.	.	.	Y	P
Query Conservation							.	.	.
Alig confidence							.	.	.
Template Conservation
Template Sequence		R	V	Y	M	D	R	G	T	Y	P
Template Known Secondary structure					S		T	T	S	S
Template Predicted Secondary structure
Template SS confidence
		320	.	.	.	.	.	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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