Job Description P60340 Confidence 100.00% Date Thu Jan 5 12:06:43 GMT 2012 Rank 10 Aligned Residues 209 % Identity 29% Template c1ze2B_ PDB info PDB header:lyase/rna Chain: B: PDB Molecule:trna pseudouridine synthase b; PDBTitle: conformational change of pseudouridine 55 synthase upon its2 association with rna substrate Resolution 3.00 Å

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		11	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90
Predicted Secondary structure
Query SS confidence
Query Sequence		I	N	G	V	L	L	L	D	K	P	Q	G	M	S	S	N	D	A	L	Q	K	V	K	R	I	Y	N	A	N	R	A	G	H	T	G	A	L	D	P	L	A	T	G	M	L	P	I	C	L	G	E	A	T	K	F	S	Q	Y	L	L	D	S	D	K	R	Y	R	V	I	A	R	L	G	Q	R	T	D	T	S	D
Query Conservation
Alig confidence																																																																				.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																																																				.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		K	H	G	I	L	V	A	Y	K	P	K	G	P	T	S	H	D	V	V	D	E	V	R	K	K	L	K	T	R	K	V	G	H	G	G	T	L	D	P	F	A	C	G	V	L	I	I	G	V	N	Q	G	T	R	I	L	E	F	Y	K	D	L	K	K	V	Y	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure												S	S	S													T	T		S					S	S				S	S			B							G	G	G	G	T	T		G	G	G	S	S	S					.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																																																				.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.
		91	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170
Predicted Secondary structure
Query SS confidence
Query Sequence		A	D	G	Q	I	V	E	E	R	P	V	T	F	S	A	E	Q	L	A	A	A	L	D	T	F	R	G	D	I	E	Q	I	P	S	M	Y	S	A	L	K	Y	Q	G	K	K	L	Y	E	Y	A	R	Q	G	I	E	V	P	R	E	A	R	P	I	T	V	Y	E	L	L	F	I	R	H	E	G	N	E	L	E	L
Query Conservation
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																										.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																										.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	E	Y	D	Q	V	P	P	A	Y	S	A	K	K	Y	K	G	E	R	L	Y	K	L	A	R	E	G	K	I	I	N	L	P	P	K	R	V	K	I	F	K	.	.	.	.	.	.	.	.	.	.	.	.	I
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.									S	S		S		B	S	S	S	S	B								S															.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																										.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
																												108	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.													.
		171	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250
Predicted Secondary structure
Query SS confidence
Query Sequence		E	I	H	C	S	K	G	T	Y	I	R	T	I	I	D	D	L	G	E	K	L	G	C	G	A	H	V	I	Y	L	R	R	L	A	V	S	K	Y	P	V	E	R	M	V	T	L	E	H	L	R	E	L	V	E	Q	A	E	Q	Q	D	I	P	A	A	E	L	L	D	P	L	L	M	P	M	D	S	P	A	S	D
Query Conservation
Alig confidence														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																			.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																			.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		R	V	E	V	S	P	G	T	Y	I	R	V	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	R	E	S	V	G	P	H	T	I	E	E	S	L	N	V	F	E	A	.	.	.	.	.	.	.	.	.	.	.	.	.	A	P	E	E	I	E	N	R	I	I	P	L	E	K	C	L	E	W
Template Known Secondary structure							T	T						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	B			S	S	S			S	S	S	S			T	T	T		.	.	.	.	.	.	.	.	.	.	.	.	.								T		B		T	T	S			S	S
Template Predicted Secondary structure														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																			.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		162	.	.	.	.	.	.	.	170	.	.	.																				.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.														.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.
		251	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.						.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.
Predicted Secondary structure																									.	.	.	.	.
Query SS confidence																									.	.	.	.	.
Query Sequence		Y	P	V	V	N	L	P	L	T	S	S	V	Y	F	K	N	G	N	P	V	R	T	S	.	.	.	.	.	G	A	P	L	E	G	L	V	R	V	T	E	G	E	N	G	K	F	I	G	M	G	E	I	D	D	E	G	R	V
Query Conservation																									.	.	.	.	.
Alig confidence																									.	.	.	.	.
Template Conservation
Template Sequence		L	P	R	V	V	V	H	Q	E	S	T	K	M	I	L	N	G	S	Q	I	H	L	E	M	L	K	E	W	D	G	F	K	K	G	E	V	V	R	V	F	N	E	E	G	R	L	L	A	L	A	E	A	E	R	N	R	K	V
Template Known Secondary structure		S				B	B		T	T	G	G	G	T	G	G	G	S					T	T	T	B								S	S								S	S	S									S
Template Predicted Secondary structure
Template SS confidence
		229	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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