Job Description P60340 Confidence 18.91% Date Thu Jan 5 12:06:43 GMT 2012 Rank 54 Aligned Residues 100 % Identity 16% Template c1z2zB_ PDB info PDB header:lyase Chain: B: PDB Molecule:probable trna pseudouridine synthase d; PDBTitle: crystal structure of the putative trna pseudouridine2 synthase d (trud) from methanosarcina mazei, northeast3 structural genomics target mar1 Resolution 2.60 Å

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		14	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.			.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.		.	.	.	90
Predicted Secondary structure																											.	.																																																	.
Query SS confidence																											.	.																																																	.
Query Sequence		V	L	L	L	D	K	P	Q	G	M	S	S	N	D	A	L	Q	K	V	K	R	I	Y	N	A	.	.	N	R	A	G	H	T	G	A	L	D	P	L	A	T	G	M	L	P	I	C	L	G	E	A	T	K	F	S	Q	Y	L	L	D	S	D	K	R	Y	R	V	I	A	R	L	G	Q	R	T	.	D	T	S	D
Query Conservation																											.	.																																																	.
Alig confidence									.																		.	.																																																	.
Template Conservation									.
Template Sequence		I	V	E	L	T	K	R	.	D	W	D	T	H	H	L	T	R	T	L	S	R	I	L	Q	V	S	Q	K	R	I	S	V	A	G	T	K	D	K	R	A	L	T	T	Q	K	I	S	I	F	D	T	D	A	S	E	I	E	K	I	H	L	K	D	I	E	L	K	V	L	G	R	S	R	K	S	V	E	L	G	D
Template Known Secondary structure									.	S															S	S		T	T	T				S					S	S	S										S			T	T								T	T										S	S				T	T
Template Predicted Secondary structure									.
Template SS confidence
		51	.	.	.	.	.	.		.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.
		91	.	.	.	.	.	.	.			.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.
Predicted Secondary structure										.	.
Query SS confidence										.	.
Query Sequence		A	D	G	Q	I	V	E	E	.	.	R	P	V	T	F	S	A	E	Q	L	A	A	A	L	D	T
Query Conservation										.	.
Alig confidence										.	.
Template Conservation
Template Sequence		L	W	G	N	D	F	R	I	T	V	R	N	I	E	N	S	P	E	E	T	E	A	L	L	K	K
Template Known Secondary structure															S	S
Template Predicted Secondary structure
Template SS confidence
		130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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