Job Description Q06065 Confidence 99.71% Date Thu Jan 5 12:33:23 GMT 2012 Rank 112 Aligned Residues 257 % Identity 14% Template c1in8A_ PDB info PDB header:dna binding protein Chain: A: PDB Molecule:holliday junction dna helicase ruvb; PDBTitle: thermotoga maritima ruvb t158v Resolution 1.90 Å

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		138	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.				.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.
Predicted Secondary structure																											.	.	.
Query SS confidence																											.	.	.
Query Sequence		T	S	W	Q	W	G	H	I	L	T	N	S	P	A	M	M	D	I	C	K	D	T	A	K	I	.	.	.	A	L	S	Q	A	S	V	L	I	S	G	E	S	G	T	G	K	E	L	I	A	R	A	I	H	Y	N	S	R	R	A	K	G	P	F	I	K	V	N	C	A	A	L	P	E	S	L	L	E	S	E	L
Query Conservation																											.	.	.
Alig confidence																											.	.	.																												.	.	.
Template Conservation																																																									.	.	.
Template Sequence		R	P	K	S	L	D	E	F	I	G	Q	E	N	V	K	K	K	L	S	L	A	L	E	A	A	K	M	R	G	E	V	L	D	H	V	L	L	A	G	P	P	G	L	G	K	T	T	L	A	H	I	I	A	S	E	.	.	.	L	Q	T	N	I	H	V	T	S	G	P	V	L	V	K	Q	G	D	M	A	A	I
Template Known Secondary structure		S		S	S	G	G	G			S																			T										S	S	T	T	S	S												.	.	.		T								T	T	T			S
Template Predicted Secondary structure																																																									.	.	.
Template SS confidence
		20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.				.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.
		215	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		F	G	H	E	K	G	A	F	T	G	A	Q	T	L	R	Q	G	L	F	E	R	A	N	E	G	T	L	L	L	D	E	I	G	E	M	P	L	V	L	Q	A	K	L	L	R	I	L	Q	E	R	E	F	E	R	I	G	G	H	Q	T	I	K	V	D	I	R	I	I	A	A	T	N	R	D	L	Q	A	M	V	K
Query Conservation
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																	.	.	.	.	.	.	.	.	.
Template Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																	.	.	.	.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	L	T	S	L	E	R	G	D	V	L	F	I	D	E	I	H	R	L	N	K	A	V	E	E	L	L	Y	S	A	I	E	D	.	.	.	.	.	.	.	.	.	F	Q	I	D	I	Q	P	F	T	L	V	G	A	T	V	R	S	G	L	L	S	S
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.			T			T	T							T	G	G	G																.	.	.	.	.	.	.	.	.	S														S		G	G	G	S
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																	.	.	.	.	.	.	.	.	.
Template SS confidence
																			97	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.										.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150
		295	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	G	T	F	R	E	D	L	F	Y	R	L	N	V	I	H	L	I	L	P	P	L	R	D	R	R	E	D	I	S	L	L	A	N	H	F	L	Q	K	F	S	S	E	N	Q	R	D	I	I	D	I	D	P	M	A	M	S	L	L	T	A	W	S	W	P	G	N	I	R	E	L	S	N	V	I	E	R	A	V	V
Query Conservation
Alig confidence			.	.	.	.	.																						.	.	.	.	.	.	.	.												.	.	.														.
Template Conservation			.	.	.	.	.																						.	.	.	.	.	.	.	.												.	.	.														.
Template Sequence		P	.	.	.	.	.	L	R	S	R	F	G	I	I	L	E	L	D	F	Y	T	V	K	E	L	K	E	.	.	.	.	.	.	.	.	I	I	K	R	A	A	S	L	M	D	V	.	.	.	E	I	E	D	A	A	A	E	M	I	A	K	R	.	S	R	G	T	P	R	I	A	I	R	L	T	K	R	V	R	D
Template Known Secondary structure			.	.	.	.	.			T	T		S																.	.	.	.	.	.	.	.									T	T		.	.	.		B											T	.	S	T	T
Template Predicted Secondary structure			.	.	.	.	.																						.	.	.	.	.	.	.	.												.	.	.														.
Template SS confidence
		166						.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.									.	.	190	.	.	.	.	.	.	.	.				.	200	.	.	.	.	.	.	.	.	.	210	.		.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.
		375	.	.				.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.				.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.
Predicted Secondary structure					.	.	.																																																								.	.	.
Query SS confidence					.	.	.																																																								.	.	.
Query Sequence		M	N	S	.	.	.	G	P	I	I	F	S	E	D	L	P	P	Q	I	R	Q	P	V	C	N	A	G	E	V	K	T	A	P	V	G	E	R	N	L	K	E	E	I	K	R	V	E	K	R	I	I	M	E	V	L	E	Q	Q	E	G	N	.	.	.	R	T	R	T	A	L	M	L	G	I	S	R	R	A	L	M
Query Conservation					.	.	.																																																								.	.	.
Alig confidence					.	.	.																								.	.	.	.	.	.	.	.	.	.	.	.	.	.																			.	.	.
Template Conservation																															.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		M	L	T	V	V	K	A	D	R	I	N	T	D	I	V	L	K	T	M	E	V	L	N	I	D	D	E	G	L	.	.	.	.	.	.	.	.	.	.	.	.	.	.	D	E	F	D	R	K	I	L	K	T	I	I	E	I	Y	R	G	G	P	V	G	L	N	A	L	A	A	S	L	G	V	E	A	D	T	L	S
Template Known Secondary structure							T		S	S	B													T			T	T			.	.	.	.	.	.	.	.	.	.	.	.	.	.															S	T	T			B										T	S
Template Predicted Secondary structure																															.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		229	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.															.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.
		449	450	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Y	K	L	Q	E	Y
Query Conservation
Alig confidence
Template Conservation
Template Sequence		E	V	Y	E	P	Y
Template Known Secondary structure			T	T
Template Predicted Secondary structure
Template SS confidence
		295	.	.	.	.	300

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions