Job Description P75800 Confidence 99.22% Date Thu Jan 5 12:14:19 GMT 2012 Rank 29 Aligned Residues 227 % Identity 7% Template c3lifA_ PDB info PDB header:signaling protein Chain: A: PDB Molecule:putative diguanylate cyclase (ggdef) with pas/pac domain; PDBTitle: crystal structure of the extracellular domain of the putative2 histidine kinase rphk1s-z16 Resolution 2.70 Å

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		31	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.		.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																		.
Query SS confidence																																																		.
Query Sequence		N	Y	Q	L	V	S	E	R	A	V	K	R	A	D	S	R	F	E	L	I	Q	K	N	V	G	Y	F	F	K	D	I	E	R	S	A	L	T	L	K	D	S	L	Y	L	L	K	N	T	.	E	E	I	Q	R	A	V	I	L	K	M	E	M	M	P	F	L	D	S	V	G	L	V	L	D	D	N	K	Y	Y	L
Query Conservation																																																		.
Alig confidence																																																		.																															.
Template Conservation																																																																																	.
Template Sequence		S	H	K	I	A	L	A	Q	S	E	T	E	X	R	N	L	S	H	S	L	A	E	H	A	T	H	T	F	Q	G	A	D	V	V	L	D	D	I	V	S	F	X	K	W	R	P	H	P	S	P	V	F	N	E	R	L	R	A	L	A	D	N	L	P	Q	L	S	D	V	A	I	L	D	A	D	G	Q	L	T	.
Template Known Secondary structure																																													T		S	S			T														T	T									T	T	S	B			.
Template Predicted Secondary structure																																																																																	.
Template SS confidence
		44	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.
		110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		F	S	R	R	A	N	D	K	I	V	V	Y	H	Q	E	Q	V	N	G	P	L	V	D	E	S	G	R	V	I	F	A	D	F	N	P	S	K	R	P	W	S	V	A	S	D	D	S	N	N	S	W	N	P	A	Y	N	C	F	D	R	P	G	K	K	C	I	S	F	T	L	H	I	N	G	K	D	H	D	L	L
Query Conservation
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																																					.	.
Template Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																																					.	.
Template Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	Y	A	S	V	K	P	V	P	A	L	D	N	S	D	R	S	Y	F	R	Y	H	R	A	N	D	D	H	T	L	L	I	T	G	P	I	Q	S	R	T	S	G	V	W	V	F	V	V	S	R	R	L	E	.	.	T	T	D	G	K
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.			S	S	S	S					B		T	T	S																							T	T	T													.	.		T	T
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																																					.	.
Template SS confidence
																							123	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.			.	.	.	.	.
		190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.			.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240												.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.
Predicted Secondary structure																					.	.																																	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																					.	.																																	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		A	V	D	K	I	H	V	D	L	N	W	R	Y	L	N	E	Y	L	D	.	.	Q	I	S	A	N	D	E	V	L	F	L	K	Q	G	H	E	I	I	A	K	N	Q	L	A	R	E	K	L	I	I	Y	N	.	.	.	.	.	.	.	.	.	.	.	S	E	G	N	Y	N	I	I	D	S	V	D	T	E	Y	I
Query Conservation																					.	.																																	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																					.	.																																	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		F	F	G	V	V	V	A	T	I	E	S	E	Y	F	S	T	F	Y	K	T	F	D	L	G	P	G	G	S	I	S	L	L	H	S	D	G	R	L	L	I	Q	W	P	S	L	Q	T	G	R	D	X	A	N	X	V	L	F	Q	K	A	L	P	R	S	P	D	G	Y	Y	L	T	V	S	P	F	D	G	L	T	K
Template Known Secondary structure																				T	T	S				T	T								T	T	S	B						T	T				S		B		T	T	S					T						S									T	T	T
Template Predicted Secondary structure
Template SS confidence
		180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.
		257	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	K	T	S	A	V	P	N	N	A	L	F	E	I	Y	F	Y	Y	P	G	G	N	L	L	N
Query Conservation
Alig confidence
Template Conservation
Template Sequence		Y	L	A	Y	R	R	V	S	R	Y	P	L	V	V	T	V	A	R	T	E	D	S	V	L	S
Template Known Secondary structure									T	T	S	S
Template Predicted Secondary structure
Template SS confidence
		260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions