Job Description P75800 Confidence 98.91% Date Thu Jan 5 12:14:19 GMT 2012 Rank 32 Aligned Residues 217 % Identity 11% Template c3by9A_ PDB info PDB header:transferase Chain: A: PDB Molecule:sensor protein; PDBTitle: crystal structure of the v. cholerae histidine kinase dctb2 sensor domain Resolution 1.70 Å

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		33	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.									.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.
Predicted Secondary structure																																													.	.	.	.	.	.	.	.
Query SS confidence																																													.	.	.	.	.	.	.	.
Query Sequence		Q	L	V	S	E	R	A	V	K	R	A	D	S	R	F	E	L	I	Q	K	N	V	G	Y	F	F	K	D	I	E	R	S	A	L	T	L	K	D	S	L	Y	L	L	.	.	.	.	.	.	.	.	K	N	T	E	E	I	Q	R	A	V	I	L	K	M	E	M	M	P	F	L	D	S	V	G	L	V	L	D	D
Query Conservation																																													.	.	.	.	.	.	.	.
Alig confidence																																													.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		R	F	Q	Y	Q	A	L	L	N	E	H	Q	S	Q	L	D	R	F	S	S	H	I	V	A	T	L	D	K	Y	A	H	I	P	H	L	I	S	K	D	K	E	L	V	D	A	L	L	S	A	Q	N	S	A	Q	I	D	I	T	N	R	Y	L	E	Q	V	N	E	V	I	Q	A	A	D	T	Y	L	I	D	R	F
Template Known Secondary structure		G	G	G																								T	T	T	T	T							T										T	T	T																				T		S							T	T
Template Predicted Secondary structure
Template SS confidence
		28	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.
		105	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		N	K	Y	Y	L	F	S	R	R	A	N	D	K	I	V	V	Y	H	Q	E	Q	V	N	G	P	L	V	D	E	S	G	R	V	I	F	A	D	F	N	P	S	K	R	P	W	S	V	A	S	D	D	S	N	N	S	W	N	P	A	Y	N	C	F	D	R	P	G	K	K	C	I	S	F	T	L	H	I	N	G	K
Query Conservation
Alig confidence														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																									.	.																						.
Template Conservation														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																									.	.																						.
Template Sequence		G	N	T	I	A	S	S	N	W	N	L	D	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	R	S	F	I	G	R	N	F	A	W	R	P	Y	F	Y	L	S	I	A	G	Q	K	S	Q	.	.	Y	F	A	L	G	S	T	S	G	Q	R	G	Y	Y	Y	A	Y	P	V	I	Y	.
Template Known Secondary structure		S	B					T	T	T	T	S	T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	T			T	T		B		T	T	S							T	T	T	S				.	.						T	T	T														.
Template Predicted Secondary structure														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																									.	.																						.
Template SS confidence
		108	.	110	.	.	.	.	.	.	.	.	.																					120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.			.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.
		185	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.
Predicted Secondary structure																																																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		D	H	D	L	L	A	V	D	K	I	H	V	D	L	N	W	R	Y	L	N	E	Y	L	D	Q	I	S	A	N	D	E	V	L	F	L	K	Q	G	H	E	I	I	A	K	N	Q	L	A	R	E	K	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation																																																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.																							.	.																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation		.	.																							.	.
Template Sequence		.	.	A	A	E	I	L	G	V	I	V	V	K	X	D	L	S	A	I	E	Q	G	W	Q	.	.	N	K	S	S	Y	F	V	A	T	D	D	H	Q	V	V	F	X	S	S	Q	P	A	W	L	F	H	S	V	A	D	L	S	P	A	Q	L	N	D	I	R	Q	S	Q	Q	Y	L	D	S	P	I	P	S	L	G
Template Known Secondary structure		.	.	T	T												S						T			.	.		S	S								T	T		B					S	S	G	G	G	T	T		B	S	S														T	T	T	T	T					B
Template Predicted Secondary structure		.	.																							.	.
Template SS confidence
				165	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.			.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240
					236	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.
Predicted Secondary structure		.	.	.
Query SS confidence		.	.	.
Query Sequence		.	.	.	L	I	I	Y	N	S	E	G	N	Y	N	I	I	D	S	V	D	T	E	Y	I	E	K	T	S	A	V	P	N	N	A	L	F	E	I	Y	F	Y	Y	P	G
Query Conservation		.	.	.
Alig confidence		.	.	.
Template Conservation
Template Sequence		W	Q	G	D	L	Q	A	E	Q	S	E	W	R	K	P	E	K	H	W	L	Q	D	D	Y	I	V	S	S	R	P	L	P	E	L	A	L	T	I	R	V	L	S	P	K
Template Known Secondary structure			B	S		T	T		S					B			T	T		S													G	G	G	T
Template Predicted Secondary structure
Template SS confidence
		241	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions