 |
Job Description | P75800 | Confidence | 85.36% | Date | Thu Jan 5 12:14:19 GMT 2012 |
Rank | 85 | Aligned Residues | 65 |
% Identity | 17% | Template | c2wcsA_ |
PDB info |
PDB header:hydrolase | Chain: A: PDB Molecule:alpha amylase, catalytic region; |
PDBTitle: crystal structure of debranching enzyme from nostoc2 punctiforme (npde)
|
Resolution | 2.80 Å |
|
 |
  |   |
664 | . | . | . | . | . | 670 | . | . | . | . | . | . | . | . | . | 680 | . | . | . | . | |
|
|
|
|
|
. | . | . | . | . | 690 | . | . | . | . | . | . | . | . | . | 700 | . | . | . | . | . | . | . | . | . | 710 | . | . | . | . | . | . | . | . | . | 720 | . | . | . | . | . | . | . | . | . | 730 | . | . | . | . | . | . | . |
Predicted Secondary structure |   |
|  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|  |  |  |  | . | . | . | . | . | . |  |
|
|
|
|
|  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |  |  |  |  |
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|  |
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
. |
. |
. |
. |
. |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
I | N | E | H | F | Y | L | N | I | E | Q | L | R | K | Q | G | V | R | I | S | I | . |
. |
. |
. |
. |
. |
D | D | F | G | T | G | L | S | N | L | K | R | F | Y | E | I | N | P | D | S | I | K | V | D | S | Q | F | T | G | D | I | F | G | T | A | G | K | I | V | R | I | I | F | D | L | A | R | Y | N | R | I | P | V |
Query Conservation |   |
  |   |   |   |   |   |   |   |   |   |   |
|   |   |   |
|   |   |   |   |
| . | . | . | . | . | . |
|
|
|
|   |
|   |
|
|
|   |   |
|   |   |   |   |   |   |   |   |
|
|
|   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |
|   |   |   |   |   |   |   |
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . | . | . |
|
|
|
|
|
|
|
| . | . | . | . | . | . | . | . |
|
|
|
|
|
|
|
|
|
|
| . | . | . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
|   |   |
|
|   |   |   |
|
|
|
|   |   |
|
|
|   |   |
|   |
|   |
|
|   |   |   |   |   |   |   |
|
|   | . | . | . | . | . | . | . | . |   |   |
|   |   |   |
|
|   |   |   | . | . | . | . | . | . |
|
|   |   |
|
|
|   |
|
|   |   |
|
|   |   |
|
|   |
|
Template Sequence |   |
D | L | W | G | I | M | E | D | L | D | Y | I | Q | N | L | G | I | N | A | I | Y | F | T | P | I | F | Q | S | A | S | N | H | R | Y | H | . |
. |
. |
. |
. |
. |
. |
. |
T | H | D | Y | Y | Q | V | D | P | M | L | . |
. |
. |
. |
. |
. |
G | G | N | E | A | F | K | E | L | L | D | A | A | H | Q | R | N | I | K | V |
Template Known Secondary structure |   |
|  |  |  |  |  |  | T |  |  |  |  |  |  |  | T |
|
|  |  |  |  | S |
|
|  |  |  | S | T | T |
| T | T | S | . | . | . | . | . | . | . | . |  |  |  |  |  |  |  |
| G | G | G | . | . | . | . | . | . | T |  |  |  |  |  |  |  |  |  |  |  |  |  |  | T | T |
|  |  |
Template Predicted Secondary structure |   |
|  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . | . | . | . | . |
|
|
|
|
|
|
|
|
|
|
| . | . | . | . | . | . |
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|  |  |
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
54 | . | . | . | . | . | 60 | . | . | . | . | . | . | . | . | . | 70 | . | . | . | . | . | . | . | . | . | 80 | . | . | . | . | . | . | . | . | |
|
|
|
|
|
|
|
. | 90 | . | . | . | . | . | . | . | . | . | |
|
|
|
|
|
100 | . | . | . | . | . | . | . | . | . | 110 | . | . | . | . | . | . | . | . | . |
  |
  |   |
738 | . | 740 | . | . |
Predicted Secondary structure |   |
 |  |  |  |
|
Query SS confidence |   |
|
|
|
|
|
Query Sequence |   |
I | A | E | G | V |
Query Conservation |   |
|
|
|
|
|
Alig confidence |   |
|
|
|
|
|
Template Conservation |   |
|
|
|
|
|
Template Sequence |   |
V | L | D | G | V |
Template Known Secondary structure |   |
 |  |  |  |
|
Template Predicted Secondary structure |   |
 |  |  |  |  |
Template SS confidence |   |
|
|
|
|
|
  |   |
120 | . | . | . | . |
  |
No model constructed - rank, confidence too low
Phyre is for academic use only
Please cite: Protein structure prediction on
the web: a case study using the Phyre server |
Kelley LA and Sternberg MJE. Nature Protocols
4, 363 - 371 (2009) [pdf] [Import into BibTeX] |
  |
|
|