Job Description P75800 Confidence 99.41% Date Thu Jan 5 12:14:19 GMT 2012 Rank 27 Aligned Residues 227 % Identity 12% Template c2p7jA_ PDB info PDB header:transcription Chain: A: PDB Molecule:putative sensory box/ggdef family protein; PDBTitle: crystal structure of the domain of putative sensory box/ggdef family2 protein from vibrio parahaemolyticus Resolution 2.25 Å

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		37	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.									.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.
Predicted Secondary structure																																										.	.	.	.	.	.	.	.
Query SS confidence																																										.	.	.	.	.	.	.	.
Query Sequence		E	R	A	V	K	R	A	D	S	R	F	E	L	I	Q	K	N	V	G	Y	F	F	K	D	I	E	R	S	A	L	T	L	K	D	S	L	Y	L	L	K	.	.	.	.	.	.	.	.	N	T	E	E	I	Q	R	A	V	I	L	K	M	E	M	M	P	F	L	D	S	V	G	L	V	L	D	D	N	K	Y	Y
Query Conservation																																										.	.	.	.	.	.	.	.
Alig confidence																																										.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		E	N	T	A	K	E	A	L	H	Q	L	A	Y	T	G	R	E	Y	N	N	I	Q	D	Q	I	E	T	I	S	D	L	L	G	H	S	Q	S	L	Y	D	Y	L	R	E	P	S	K	A	N	L	T	I	L	E	N	X	W	S	S	V	A	R	N	Q	K	L	Y	K	Q	I	R	F	L	D	T	S	G	T	E	K
Template Known Secondary structure																																			T										S																															T	T	S	B
Template Predicted Secondary structure
Template SS confidence
		12	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.
		109	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.			.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.							.	.	.	.	.	.	180
Predicted Secondary structure																																																	.	.																			.	.	.	.	.	.
Query SS confidence																																																	.	.																			.	.	.	.	.	.
Query Sequence		L	F	S	R	R	A	N	D	K	I	V	V	Y	H	Q	E	Q	V	N	G	P	L	V	D	E	S	G	R	V	I	F	A	D	F	N	P	S	K	R	P	W	S	V	A	S	D	D	.	.	S	N	N	S	W	N	P	A	Y	N	C	F	D	R	P	G	K	K	.	.	.	.	.	.	C	I	S	F	T	L	H
Query Conservation																																																	.	.																			.	.	.	.	.	.
Alig confidence															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																				.	.																			.	.	.	.	.	.
Template Conservation															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		V	R	I	K	Y	D	F	K	T	S	I	A	G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	P	S	L	I	L	R	D	K	S	A	R	E	Y	F	K	Y	A	Q	S	L	D	N	E	Q	I	S	A	W	G	I	E	L	E	R	D	K	G	E	L	V	Y	P	L	S	P	S	L	R	I	L	X	P
Template Known Secondary structure								T	T	T	T				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.							B		T	T	S								T	S		T	T													T	T				S	S
Template Predicted Secondary structure															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		92	.	.	.	.	.	.	.	100	.	.	.	.																.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.
		181	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.		.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.
Predicted Secondary structure																														.																																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																														.																																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		I	N	G	K	D	H	D	L	L	A	V	D	K	I	H	V	D	L	N	W	R	Y	L	N	E	Y	L	D	.	Q	I	S	A	N	D	E	V	L	F	L	K	Q	G	H	E	I	I	A	K	N	Q	L	A	R	E	K	L	I	I	Y	N	S	E	G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation																														.																																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence					.	.	.																							.																																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation					.	.	.
Template Sequence		I	S	V	.	.	.	N	D	V	R	Q	G	Y	L	V	L	N	V	D	I	E	Y	L	S	S	L	L	N	Y	S	P	V	R	D	F	H	I	E	L	V	K	H	K	G	F	Y	I	A	S	P	D	E	S	R	L	Y	G	D	I	I	P	E	R	S	Q	F	N	F	S	N	X	Y	P	D	I	W	P	R	V	V
Template Known Secondary structure					.	.	.	T	T																				S			T	T	T	T								T	T	S	B					S		G	G	G	B	T	T	T	T	S	T	T		T	T		B						T	T	T
Template Predicted Secondary structure					.	.	.
Template SS confidence
		157	.	.				160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.
				244	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.
Predicted Secondary structure		.	.
Query SS confidence		.	.
Query Sequence		.	.	N	Y	N	I	I	D	S	V	D	T	E	Y	I	E	K	T	S	A	V	P	N	N	A	L	F	E	I	Y	F	Y	Y	P	G	G	N	L	L	N
Query Conservation		.	.
Alig confidence		.	.
Template Conservation
Template Sequence		S	E	Q	A	G	Y	S	Y	S	G	E	H	L	I	A	F	S	S	I	K	F	V	S	N	E	P	L	H	L	I	I	D	L	S	N	E	Q	L	S	K
Template Known Secondary structure		T	T								S	S											S	S	S	S
Template Predicted Secondary structure
Template SS confidence
		234	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions