Return to main results Retrieve Phyre Job Id

Job DescriptionP00448
Confidence100.00%DateThu Jan 5 10:56:37 GMT 2012
Rank3Aligned Residues199
% Identity52%Templatec1gv3B_
PDB info PDB header:manganese superoxide dismutaseChain: B: PDB Molecule:manganese superoxide dismutase; PDBTitle: the 2.0 angstrom resolution structure of the catalytic2 portion of a cyanobacterial membrane-bound manganese3 superoxide dismutase
Resolution2.0 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   1........10.........20.........30.........40.........50.........60.........70.........80
Predicted Secondary structure 























Query SS confidence 















































































Query Sequence  MSYTLPSLPYAYDALEPHFDKQTMEIHHTKHHQTYVNNANAALESLPEFANLPVEELITKLDQLPADKKTVLRNNAGGHA
Query Conservation      

 


    


 

   
  
  


  

  

                               
  

 
  
Alig confidence 















































































Template Conservation   
  

 


    


 

  

  
  


  

  

  
             
              
 


 
  
Template Sequence  NPAELPPLPYGYDALEKAIDAETMKLHHDKHHAAYVNNLNNALKKHPELQNSSVEALLRDLNSVPEDIRTTVRNNGGGHL
Template Known Secondary structure  TT





SS
TTTTTTTS
TT
GGGTTS
TGGGS
TTT
Template Predicted Secondary structure 
























Template SS confidence 















































































   36...40.........50.........60.........70.........80.........90.........100.........110.....
 
   81........90.... .....100.........110.........120.........130...... ...140.........150.......
Predicted Secondary structure 





..









.













Query SS confidence 













. .









































.




















Query Sequence  NHSLFWKGLKKGTT. . LQGDLKAAIERDFGSVDNFKAEFEKAAASRFGSGWAWLVLKG. DKLAVVSTANQDSPLMGEAIS
Query Conservation 

  

  
 
   ..
   
   
   


 
 

  
   
    







 
 .  
 
  
 
   
       
Alig confidence 













..









































.
















....
Template Conservation 

  

  
 
     
   
   
   


 
 

  
   
   








 
    
 
  
 
   
   ....
Template Sequence  NHTIFWQIMSPDGGGQPTGDIAQEINQTFGSFEEFKKQFNQAGGDRFGSGWVWLVRNPQGQLQVVSTPNQDNPIME. . . .
Template Known Secondary structure  TB
TT

SS

SS

SS
TTS
TT

GGGG....
Template Predicted Secondary structure 





























....
Template SS confidence 















































































   116...120.........130.........140.........150.........160.........170.........180.........190.
 
   158.160.........170.........180.........190.........200.....
Predicted Secondary structure 











Query SS confidence 















































Query Sequence  GASGFPIMGLDVWEHAYYLKFQNRRPDYIKEFWNVVNWDEAAARFAAK
Query Conservation       


 











 
 
  

   
  


  
  
   
Alig confidence  ..













































Template Conservation  ..   


 











 
 
  

  
   


  
  
   
Template Sequence  . . GSYPIMGNDVWEHAYYLRYQNRRPEYLNNWWNVVNWSEINRRTQAS
Template Known Secondary structure  ..T

SGGGTTT
GGGB

Template Predicted Secondary structure  ..








Template SS confidence 















































   192.......200.........210.........220.........230.......
 
Download:Text version FASTA pairwise alignment 3D Model in PDB format

View in Jmol

Send structure to FirstGlance for more viewing options


Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
Disclaimer
Terms and Conditions