Job Description P33030 Confidence 93.50% Date Thu Jan 5 11:51:08 GMT 2012 Rank 402 Aligned Residues 160 % Identity 17% Template c3g5uB_ PDB info PDB header:membrane protein Chain: B: PDB Molecule:multidrug resistance protein 1a; PDBTitle: structure of p-glycoprotein reveals a molecular basis for2 poly-specific drug binding Resolution 3.80 Å

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		3	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.				.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																										.	.	.
Query SS confidence																																																										.	.	.
Query Sequence		R	T	N	L	I	T	G	F	L	G	S	G	K	T	T	S	I	L	H	L	L	A	H	K	D	P	N	E	K	W	A	V	L	V	N	E	F	G	E	V	G	I	D	G	A	L	L	A	D	S	G	A	L	L	K	E	.	.	.	I	P	G	G	C	M	C	C	V	N	G	L	P	M	Q	V	G	L	N	T	L
Query Conservation																																																										.	.	.
Alig confidence																												.																														.	.	.					.	.	.	.							.	.	.	.	.	.	.
Template Conservation																												.																																					.	.	.	.							.	.	.	.	.	.	.
Template Sequence		Q	T	L	A	L	V	G	S	S	G	C	G	K	S	T	V	V	Q	L	L	E	R	F	Y	D	P	.	M	A	G	S	V	F	L	D	G	K	E	I	K	Q	L	N	V	Q	W	L	R	A	Q	L	G	I	V	S	Q	E	P	I	L	F	D	C	.	.	.	.	S	I	A	E	N	I	.	.	.	.	.	.	.
Template Known Secondary structure		S							S	S	S	T	T									T	T	S	S			.	S						S	S	S	S		B	T	S	S						T	T	S						S	S					S	S	.	.	.	.	B						.	.	.	.	.	.	.
Template Predicted Secondary structure																												.																																					.	.	.	.							.	.	.	.	.	.	.
Template SS confidence
		1060	.	.	.	.	.	.	.	.	.	1070	.	.	.	.	.	.	.	.	.	1080	.	.	.	.	.		.	.	.	.	1090	.	.	.	.	.	.	.	.	.	1100	.	.	.	.	.	.	.	.	.	1110	.	.	.	.	.	.	.	.	.	1120	.					.	.	.	.	.	.
		80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.						.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.
Predicted Secondary structure																																					.	.	.	.	.																																								.
Query SS confidence																																					.	.	.	.	.																																								.
Query Sequence		L	R	Q	G	K	P	D	R	L	L	I	E	P	T	G	L	G	H	P	K	Q	I	L	D	L	L	T	A	P	V	Y	E	P	W	I	.	.	.	.	.	D	L	R	A	T	L	C	I	L	D	P	R	L	L	L	D	E	K	S	A	S	N	E	N	F	R	D	Q	L	A	A	A	D	I	I	V	A	N	K	.
Query Conservation																																					.	.	.	.	.																																								.
Alig confidence		.	.	.	.	.	.	.	.																												.	.	.	.	.								.																																.
Template Conservation		.	.	.	.	.	.	.	.																																								.
Template Sequence		.	.	.	.	.	.	.	.	A	Y	G	D	N	S	R	V	V	S	Y	E	E	I	V	R	A	A	K	E	A	N	I	H	Q	F	I	D	S	L	P	D	K	Y	N	T	R	V	G	.	D	K	G	T	Q	L	S	G	G	Q	K	Q	R	I	A	I	A	R	A	L	V	R	Q	P	H	I	L	L	L	D	E	A
Template Known Secondary structure		.	.	.	.	.	.	.	.	T				S	S																T						S	S	T	T	T	G	G	G		B		S	.	T	T	S		S	S																			S	S					S
Template Predicted Secondary structure		.	.	.	.	.	.	.	.																																								.
Template SS confidence
										1128	.	1130	.	.	.	.	.	.	.	.	.	1140	.	.	.	.	.	.	.	.	.	1150	.	.	.	.	.	.	.	.	.	1160	.	.	.	.	.	.		.	.	.	1170	.	.	.	.	.	.	.	.	.	1180	.	.	.	.	.	.	.	.	.	1190	.	.	.	.	.	.	.	.
		154	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	D	R	T	T	P	E	S	E	Q	A	L	Q	R	W	W	Q	Q	N	G	G	D	R	Q	L	I	H	S	E	H
Query Conservation
Alig confidence
Template Conservation
Template Sequence		T	S	A	L	D	T	E	S	E	K	V	V	Q	E	A	L	D	K	A	R	E	G	R	T	C	I	V	I	A	H
Template Known Secondary structure		S	S	S																	S	S	S	S							S
Template Predicted Secondary structure
Template SS confidence
		1199	1200	.	.	.	.	.	.	.	.	.	1210	.	.	.	.	.	.	.	.	.	1220	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions