Job Description P33030 Confidence 98.79% Date Thu Jan 5 11:51:08 GMT 2012 Rank 23 Aligned Residues 144 % Identity 17% Template c2v3cC_ PDB info PDB header:signaling protein Chain: C: PDB Molecule:signal recognition 54 kda protein; PDBTitle: crystal structure of the srp54-srp19-7s.s srp rna complex2 of m. jannaschii Resolution 2.50 Å

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		4	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.		.	.	.	.	30	.	.	.	.	.	.	.	.				.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																								.														.	.	.
Query SS confidence																								.														.	.	.
Query Sequence		T	N	L	I	T	G	F	L	G	S	G	K	T	T	S	I	L	H	L	L	A	H	.	K	D	P	N	E	K	W	A	V	L	V	N	E	.	.	.	F	G	E	V	G	I	D	G	A	L	L	A	D	S	G	A	L	L	K	E	I	P	G	G	C	M	C	C	V	N	G	L	P	M	Q	V	G	L	N	T	L
Query Conservation																								.														.	.	.
Alig confidence																								.														.	.	.																									.	.	.	.	.
Template Conservation																																																																	.	.	.	.	.
Template Sequence		V	I	L	L	V	G	I	Q	G	S	G	K	T	T	T	A	A	K	L	A	R	Y	I	Q	K	R	G	L	K	P	A	L	I	A	A	D	T	Y	R	P	A	A	Y	E	Q	L	K	Q	L	A	E	K	I	H	V	P	I	Y	G	D	E	T	R	.	.	.	.	.	T	K	S	P	V	D	I	V	K	E	G	M
Template Known Secondary structure									S	S	S	S	T	T																							S				T	T	G	G	G	S	S							S	S							S	S	S	.	.	.	.	.			S	S	S	T	T
Template Predicted Secondary structure																																																																	.	.	.	.	.
Template SS confidence
		102	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.						.	.	.	.	.	170	.	.	.	.	.	.
		80	.	.	.	.	.	.	.	.	.	90	.	.	.	.		.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.
Predicted Secondary structure																	.
Query SS confidence																	.
Query Sequence		L	R	Q	G	K	P	D	R	L	L	I	E	P	T	G	.	L	G	H	P	K	Q	I	L	D	L	L	T	A	P	V	Y	E	P	W	I	D	L	R	A	T	L	C	I	L	D	P	R	L	L	L	D	E	K	S	A	S	N	E	N	F	R	D	Q	L	A	A	A	D	I	I	V	A	N	K	S	D
Query Conservation																	.
Alig confidence																	.														.	.																				.
Template Conservation																															.	.																				.
Template Sequence		E	K	F	K	K	A	D	V	L	I	I	D	T	A	G	R	H	K	E	E	K	G	L	L	E	E	M	K	Q	.	.	I	K	E	I	T	N	P	D	E	I	I	L	V	I	D	G	T	I	G	.	Q	Q	A	G	I	Q	A	K	A	F	K	E	A	V	G	E	I	G	S	I	I	V	T	K	L	D
Template Known Secondary structure			T	T	S	S		S									S		S	S											.	.	T	T	S	S	S			S								G	G	G	G	.	G	G										T	T	S		S									S	S
Template Predicted Secondary structure																															.	.																				.
Template SS confidence
		177	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.			.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.		.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions