Job Description P33030 Confidence 97.42% Date Thu Jan 5 11:51:08 GMT 2012 Rank 97 Aligned Residues 133 % Identity 16% Template c2q3fB_ PDB info PDB header:protein binding Chain: B: PDB Molecule:ras-related gtp-binding protein d; PDBTitle: x-ray crystal structure of putative human ras-related gtp2 binding d in complex with gmppnp Resolution 2.10 Å

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		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80
Predicted Secondary structure
Query SS confidence
Query Sequence		M	T	R	T	N	L	I	T	G	F	L	G	S	G	K	T	T	S	I	L	H	L	L	A	H	K	D	P	N	E	K	W	A	V	L	V	N	E	F	G	E	V	G	I	D	G	A	L	L	A	D	S	G	A	L	L	K	E	I	P	G	G	C	M	C	C	V	N	G	L	P	M	Q	V	G	L	N	T	L	L
Query Conservation
Alig confidence																																	.	.	.	.	.	.	.	.	.	.	.	.	.	.																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																	.	.	.	.	.	.	.	.	.	.	.	.	.	.																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		V	K	P	R	I	L	L	X	G	L	R	R	S	G	K	S	S	I	Q	K	V	V	F	H	K	X	S	P	N	E	T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	L	F	L	E	S	T	N	K	I	C	R	E	D	V	S	N	S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure											S	T	T	S	S										S				G	G	G	G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	G						S									S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																	.	.	.	.	.	.	.	.	.	.	.	.	.	.																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		42	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.															.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.
		81	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.						.	.	150	.	.	.	.	.
Predicted Secondary structure																																																																					.	.	.	.	.
Query SS confidence																																																																					.	.	.	.	.
Query Sequence		R	Q	G	K	P	D	R	L	L	I	E	P	T	G	L	G	H	P	K	Q	I	L	D	L	L	T	A	P	V	Y	E	P	W	I	D	L	R	A	T	L	C	I	L	D	P	R	L	L	L	D	E	K	S	A	S	N	E	N	F	R	D	Q	L	A	A	A	D	.	.	.	.	.	I	I	V	A	N	K	S	D
Query Conservation																																																																					.	.	.	.	.
Alig confidence		.	.																	.	.	.	.																																														.	.	.	.	.
Template Conservation		.	.																	.	.	.	.
Template Sequence		.	.	S	F	V	N	F	Q	I	W	D	F	P	G	Q	I	D	F	.	.	.	.	F	D	P	T	F	D	Y	E	X	I	F	R	G	T	G	A	L	I	F	V	I	D	S	Q	D	D	Y	X	E	A	L	A	R	L	H	L	T	V	T	R	A	Y	K	V	N	T	D	I	N	F	E	V	F	I	H	K	V	D
Template Known Secondary structure		.	.	S											S				T	.	.	.	.	T		T	T									T										T	T	S																					T	T										T	T
Template Predicted Secondary structure		.	.																	.	.	.	.
Template SS confidence
				90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.					.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.
		156	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	T	T	P	E	S	E	Q	A	L	Q	R	W	W	Q	Q
Query Conservation
Alig confidence
Template Conservation
Template Sequence		G	L	S	D	D	H	K	I	E	T	Q	R	D	I	H	Q
Template Known Secondary structure		S	S
Template Predicted Secondary structure
Template SS confidence
		164	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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