Return to main results Retrieve Phyre Job Id

Job DescriptionP33030
Confidence98.93%DateThu Jan 5 11:51:08 GMT 2012
Rank17Aligned Residues153
% Identity16%Templatec1zu4A_
PDB info PDB header:protein transportChain: A: PDB Molecule:ftsy; PDBTitle: crystal structure of ftsy from mycoplasma mycoides- space2 group p21212
Resolution1.95 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   3......10.........20..... ....30.........40.........50 .........60.........70.......
Predicted Secondary structure 





.












....












Query SS confidence 






















.
























. . . .


























Query Sequence  RTNLITGFLGSGKTTSILHLLAH. KDPNEKWAVLVNEFGEVGIDGALLA. . . . DSGALLKEIPGGCMCCVNGLPMQVGLN
Query Conservation   















  

  .       


 

 
   

  

 ....     
 

  




     
   
 
Alig confidence 






















.
























....


























Template Conservation   

   
  
 




 



      
 

 

  
  
  
  

                          
   
  
Template Sequence  NIFMLVGVNGTGKTTSLAKMANYYAELGYKVLIAAADTFRAGATQQLEEWIKTRLNNKVDLVKANKLNADPASVVFDAIK
Template Known Secondary structure  SSTTSSTT




S
TTTS
TT

SSTT

Template Predicted Secondary structure 

























Template SS confidence 















































































   197..200.........210.........220.........230.........240.........250.........260.........270......
 
   78.80.........90........ .100.........110.........120.........130.........140.........150..
Predicted Secondary structure 










.....










Query SS confidence 




















. . . . .





















































Query Sequence  TLLRQGKPDRLLIEPTGLGHP. . . . . KQILDLLTAPVYEPWIDLRATLCILDPRLLLDEKSASNENFRDQLAAADIIVAN
Query Conservation   
      
 



 

 
 
.....  
   
          
  

 



                

  

 



Alig confidence 




.














.....








































..










Template Conservation       .  
 







         

  
           
    


 
              ..        


Template Sequence  KAKEQ. NYDLLLIDTAGRLQNKTNLMAELEKMNKIIQQVEKSAPHEVLLVIDATTGQNGVIQAEEFS. . KVADVSGIILT
Template Known Secondary structure  T.T
S



GGGTT
TT

SGGGTT..TTS


Template Predicted Secondary structure 
.





















..




Template SS confidence 















































































   277..280. ........290.........300.........310.........320.........330.........340.. .......350...
 
   153.....
Predicted Secondary structure 





Query SS confidence 





Query Sequence  KSDRTT
Query Conservation 
 
   
Alig confidence 





Template Conservation 



  
Template Sequence  KMDSTS
Template Known Secondary structure 
GGG
S
Template Predicted Secondary structure 





Template SS confidence 





   354.....
 
Download:Text version FASTA pairwise alignment 3D Model in PDB format

View in Jmol

Send structure to FirstGlance for more viewing options


Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
Disclaimer
Terms and Conditions