Job Description P33030 Confidence 97.70% Date Thu Jan 5 11:51:08 GMT 2012 Rank 68 Aligned Residues 137 % Identity 15% Template c1mj1A_ PDB info PDB header:ribosome Chain: A: PDB Molecule:elongation factor tu; PDBTitle: fitting the ternary complex of ef-tu/trna/gtp and ribosomal proteins2 into a 13 a cryo-em map of the coli 70s ribosome Resolution 13.00 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		6	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.					.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.
Predicted Secondary structure																					.	.	.	.
Query SS confidence																					.	.	.	.
Query Sequence		L	I	T	G	F	L	G	S	G	K	T	T	S	I	L	H	L	L	A	.	.	.	.	H	K	D	P	N	E	K	W	A	V	L	V	N	E	F	G	E	V	G	I	D	G	A	L	L	A	D	S	G	A	L	L	K	E	I	P	G	G	C	M	C	C	V	N	G	L	P	M	Q	V	G	L	N	T	L	L	R
Query Conservation																					.	.	.	.
Alig confidence																					.	.	.	.																																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		G	T	I	G	H	V	D	H	G	K	T	T	L	T	A	A	L	T	Y	V	A	A	A	E	N	R	N	V	E	V	K	D	Y	G	D	I	D	K	A	R	E	E	R	A	R	G	I	T	I	N	T	A	H	V	E	Y	E	T	A	K	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure						S	T	T	S	S																S	T	T										S		S						T	T	S			S									S	S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		15	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.
		82	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150		.	.	.	.	.	.	.		.	.
Predicted Secondary structure																																																																							.								.
Query SS confidence																																																																							.								.
Query Sequence		Q	G	K	P	D	R	L	L	I	E	P	T	G	L	G	H	P	K	Q	I	L	D	L	L	T	A	P	V	Y	E	P	W	I	D	L	R	A	T	L	C	I	L	D	P	R	L	L	L	D	E	K	S	A	S	N	E	N	F	R	D	Q	L	A	A	A	D	I	I	V	.	A	N	K	S	D	R	T	.	T	P
Query Conservation																																																																							.								.
Alig confidence		.	.	.																			.	.	.	.	.	.	.																																										.								.
Template Conservation		.	.	.																			.	.	.	.	.	.	.
Template Sequence		.	.	.	R	H	Y	S	H	V	D	C	R	G	H	A	D	Y	I	K	N	M	.	.	.	.	.	.	.	I	T	G	A	A	Q	M	D	G	A	I	L	V	V	S	A	A	D	G	R	M	R	Q	T	R	E	H	I	L	L	A	R	Q	V	G	V	R	Y	I	V	V	F	M	N	K	V	D	M	V	D	D	R
Template Known Secondary structure		.	.	.											S	G	G	G					.	.	.	.	.	.	.					T	T		S	S							T	T	T		S														T	T											G	G	G
Template Predicted Secondary structure		.	.	.																			.	.	.	.	.	.	.
Template SS confidence
					75	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.								.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.
		160	.	.	.	.	.	.	.	.	.	170	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	S	E	Q	A	L	Q	R	W	W	Q	Q	N
Query Conservation
Alig confidence
Template Conservation
Template Sequence		E	L	L	D	L	V	E	M	E	V	R	D	L
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		145	.	.	.	.	150	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions