Job Description P25550 Confidence 99.40% Date Thu Jan 5 11:42:07 GMT 2012 Rank 10 Aligned Residues 188 % Identity 15% Template c3rfaA_ PDB info PDB header:oxidoreductase Chain: A: PDB Molecule:ribosomal rna large subunit methyltransferase n; PDBTitle: x-ray structure of rlmn from escherichia coli in complex with s-2 adenosylmethionine Resolution 2.05 Å

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		6	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60							.	.	.	.	.	.	.	.	.	70	.	.	.		.	.	.	.	.
Predicted Secondary structure																																																									.	.	.	.	.	.														.
Query SS confidence																																																									.	.	.	.	.	.														.
Query Sequence		P	T	R	A	F	H	V	M	A	K	P	S	G	S	D	C	N	L	N	C	D	Y	C	F	Y	L	E	K	Q	S	L	Y	R	E	K	P	V	T	H	M	D	D	D	T	L	E	A	Y	V	R	H	Y	I	A	A	.	.	.	.	.	.	S	E	P	Q	N	E	V	A	F	T	W	Q	G	.	G	E	P	T	L
Query Conservation																																																									.	.	.	.	.	.														.
Alig confidence																									.	.	.	.	.	.																											.	.	.	.	.	.														.
Template Conservation																									.	.	.	.	.	.
Template Sequence		P	E	D	D	R	A	T	L	C	V	S	S	Q	V	G	C	A	L	E	C	K	F	C	.	.	.	.	.	.	S	T	A	Q	Q	G	F	N	R	N	L	R	V	S	E	I	I	G	Q	V	W	R	A	A	K	I	V	G	A	A	K	V	T	G	Q	R	P	I	T	N	V	V	M	M	G	M	G	E	P	L	L
Template Known Secondary structure				S	S													S	S			T	T		.	.	.	.	.	.	G	G	G	T	T																													S	S		S		S						S	S	S		G	G	G
Template Predicted Secondary structure																									.	.	.	.	.	.
Template SS confidence
		110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.							.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.
		79	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.				.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.
Predicted Secondary structure																										.	.	.
Query SS confidence																										.	.	.
Query Sequence		L	G	L	A	F	Y	R	R	A	V	A	L	Q	A	K	Y	G	A	G	R	K	I	S	N	.	.	.	S	F	Q	T	N	G	V	L	L	D	D	E	W	C	A	F	L	A	E	H	H	F	L	V	G	L	S	L	D	G	P	P	E	I	H	N	Q	Y	R	V	T	K	G	G	R	P	T	H	K	L	V	M	R
Query Conservation																										.	.	.
Alig confidence			.	.	.	.																				.	.	.
Template Conservation			.	.	.	.
Template Sequence		N	.	.	.	.	L	N	N	V	V	P	A	M	E	I	M	L	D	D	F	G	F	G	L	S	K	R	R	V	T	L	S	T	S	G	V	V	P	A	L	D	K	L	G	D	M	I	D	V	A	L	A	I	S	L	H	A	P	N	D	E	I	R	D	E	I	V	P	I	N	K	K	Y	N	I	E	T	F	L	A
Template Known Secondary structure			.	.	.	.													S	T	T	T	T				G	G	G						S																								S	S								S	G	G	G	G	T	S
Template Predicted Secondary structure			.	.	.	.
Template SS confidence
		184					.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.
		156	.	.	.	160	.	.					.	.	.	.	.	.	.	170	.	.	.	.	.				.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.
Predicted Secondary structure									.	.	.	.														.	.	.
Query SS confidence									.	.	.	.														.	.	.
Query Sequence		A	L	T	L	L	Q	K	.	.	.	.	H	H	V	D	Y	N	V	L	V	C	V	N	R	.	.	.	T	S	A	Q	Q	P	L	Q	V	Y	D	F	L	C	D	A	G	V	E	F	I	Q	F	I	P	V	V	E	R
Query Conservation									.	.	.	.														.	.	.
Alig confidence									.	.	.	.														.	.	.																			.
Template Conservation																																															.
Template Sequence		A	V	R	R	Y	L	E	K	S	N	A	N	Q	G	R	V	T	I	E	Y	V	M	L	D	H	V	N	D	G	T	E	H	A	H	Q	L	A	E	L	L	K	D	T	P	C	.	K	I	N	L	I	P	W	N	P	F
Template Known Secondary structure											T	T	T	T	T									B	T	T	T	T		S											T	T	T	S			.
Template Predicted Secondary structure																																															.
Template SS confidence
		260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.		.	.	.	.	.	310	.	.	.	.

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions