Job Description P25550 Confidence 98.56% Date Thu Jan 5 11:42:07 GMT 2012 Rank 13 Aligned Residues 169 % Identity 8% Template c2qgqF_ PDB info PDB header:structural genomics, unknown function Chain: F: PDB Molecule:protein tm_1862; PDBTitle: crystal structure of tm_1862 from thermotoga maritima.2 northeast structural genomics consortium target vr77 Resolution 2.00 Å

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		25	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.						.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																													.	.	.	.	.
Query SS confidence																																																													.	.	.	.	.
Query Sequence		C	D	Y	C	F	Y	L	E	K	Q	S	L	Y	R	E	K	P	V	T	H	M	D	D	D	T	L	E	A	Y	V	R	H	Y	I	A	A	S	E	P	Q	N	E	V	A	F	T	W	Q	G	G	E	P	T	L	L	G	L	A	F	.	.	.	.	.	Y	R	R	A	V	A	L	Q	A	K	Y	G	A	G	R	K
Query Conservation																																																													.	.	.	.	.
Alig confidence																		.	.	.	.	.																			.	.	.	.																	.	.	.	.	.
Template Conservation																		.	.	.	.	.																			.	.	.	.
Template Sequence		R	P	Y	A	Y	V	K	I	S	D	G	S	L	R	S	R	.	.	.	.	.	S	I	E	D	I	T	R	E	V	E	D	L	L	K	E	G	K	K	.	.	.	.	E	I	I	L	V	A	Q	D	T	T	S	Y	G	I	D	L	Y	R	K	Q	A	L	P	D	L	L	R	R	L	N	S	L	N	G	E	F	W
Template Known Secondary structure			S							B						B		.	.	.	.	.															T	T			.	.	.	.							S		G	G	G	T	T	T	T	T	T	S	S												T	S	S	S	S
Template Predicted Secondary structure																		.	.	.	.	.																			.	.	.	.
Template SS confidence
		137	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.						.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170					.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.
		100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.			.	.	.	.	.	.	170	.	.	.	.			.
Predicted Secondary structure																																																																		.	.												.	.
Query SS confidence																																																																		.	.												.	.
Query Sequence		I	S	N	S	F	Q	T	N	G	V	L	L	D	D	E	W	C	A	F	L	A	E	H	H	F	L	V	G	L	S	L	D	G	P	P	E	I	H	N	Q	Y	R	V	T	K	G	G	R	P	T	H	K	L	V	M	R	A	L	T	L	L	Q	K	H	.	.	H	V	D	Y	N	V	L	V	C	V	N	.	.	R
Query Conservation																																																																		.	.												.	.
Alig confidence							.																																																											.	.												.	.
Template Conservation							.
Template Sequence		I	R	V	X	Y	.	L	H	P	D	H	L	T	E	E	I	I	S	A	X	L	E	L	D	K	V	V	K	Y	F	D	V	P	V	Q	H	G	S	D	K	I	L	K	L	X	G	R	T	K	S	S	E	E	L	K	K	X	L	S	S	I	R	E	R	F	P	D	A	V	L	R	T	S	I	I	V	G	F	P	G
Template Known Secondary structure							.			G	G	G													T	T	B		S							B		S									T			S																	T	T										S		T	T
Template Predicted Secondary structure							.
Template SS confidence
		223	.	.	.	.		.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.
		176	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	S	A	Q	Q	P	L	Q	V	Y	D	F	L	C	D	A	G	V	E	F	I	Q	F	I	P	V	V	E
Query Conservation
Alig confidence
Template Conservation
Template Sequence		E	T	E	E	D	F	E	E	L	K	Q	F	V	E	E	I	Q	F	D	K	L	G	A	F	V	Y	S	D
Template Known Secondary structure																				S
Template Predicted Secondary structure
Template SS confidence
		302	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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