 |
Job Description | P25550 | Confidence | 34.65% | Date | Thu Jan 5 11:42:07 GMT 2012 |
Rank | 33 | Aligned Residues | 72 |
% Identity | 11% | Template | c1dd9A_ |
PDB info |
PDB header:transferase | Chain: A: PDB Molecule:dna primase; |
PDBTitle: structure of the dnag catalytic core
|
Resolution | 1.60 Å |
|
 |
  |   |
99 | 100 | . | . | . | . | . | . | . | . | . | 110 | . | . | . | . | . | . | . | . | . | 120 | . | . | . | . | . | . | . | . | . | 130 | . | . | . | . | . | . | . | . | . | 140 | . | . | . | . | . | . | . | . | . | 150 | . | . | . | . | . | . | . | . | . | 160 | . | . | . | . | . | . | . | . | . | 170 | . | . | . | . | . | . | . | . |
Predicted Secondary structure |   |
|  |  |  |  |  |  |  |
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |
|
|
|  |  |  |  |  |  |  |  |  |
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |  |  |
|
|
|
|  |
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
K | I | S | N | S | F | Q | T | N | G | V | L | L | D | D | E | W | C | A | F | L | A | E | H | H | F | L | V | G | L | S | L | D | G | P | P | E | I | H | N | Q | Y | R | V | T | K | G | G | R | P | T | H | K | L | V | M | R | A | L | T | L | L | Q | K | H | H | V | D | Y | N | V | L | V | C | V | N | R | T | S | A |
Query Conservation |   |
  |   |   |   |   |
|   |
|
|
|   |
|
|   |   |   |   |   |   |   |
|   |   |   |   |   |   |
|   |
|
|   |
|
|   |   |   |   |   |
|   |   |
|   |   |   |   |
|   |   |   |   |   |   |
|   |   |   |
|   |   |
|   |   |   |
|   |   |   |   |
|   |   |   |   |   |   |   |
|   |
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . | . | . | . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
|   |   |   |   |
|
|   |   |
|
|
| . |   |   |   |   |   |   |   |
|   |   |   |   |   |   |
|
|
|   |   |
|   |
|   |
| . | . | . | . | . | . | . | . | . | . |
|   |   |
|   |   |
|   |   |   |   |
|   |   |   |   |   |   |   |   |   |
|   |
|   |   |
|
|   |
|   |
|   |
Template Sequence |   |
G | I | N | Y | A | V | A | S | L | G | S | T | . |
T | A | D | H | I | Q | L | L | F | R | A | T | N | N | V | I | C | C | Y | D | G | D | R | A | . |
. |
. |
. |
. |
. |
. |
. |
. |
. |
G | R | D | A | A | W | R | A | L | E | T | A | L | P | Y | M | T | D | G | R | Q | L | R | F | M | F | L | P | D | G | E | D | P |
Template Known Secondary structure |   |
T |
|
|
|  |  |  |
|
|
|
|
| . |
|  |  |  |  |  |  |  |  |  |  |
| S |  |  |  |  |  |  |  | S | S |  |  | . | . | . | . | . | . | . | . | . | . |  |  |  |  |  |  |  |  |  |  |  |  | G | G | G |
|
| T | T |
|  |  |  |  |  |  |  |
| T | T |
|
|  |
Template Predicted Secondary structure |   |
|
|
|
|  |  |  |
|
|
|
|
| . |  |  |  |  |  |  |  |  |  |  |  |
|
|  |  |  |  |  |  |
|
|
|
|
| . | . | . | . | . | . | . | . | . | . |
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|  |  |  |  |  |  |
|
|
|
|
|
|  |
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
277 | . | . | 280 | . | . | . | . | . | . | . | . | |
. | 290 | . | . | . | . | . | . | . | . | . | 300 | . | . | . | . | . | . | . | . | . | 310 | . | . | |
|
|
|
|
|
|
|
|
|
. | . | . | . | . | . | . | 320 | . | . | . | . | . | . | . | . | . | 330 | . | . | . | . | . | . | . | . | . | 340 | . | . | . | . | . |
  |
  |   |
179 | 180 | . |
Predicted Secondary structure |   |
 |  |  |
Query SS confidence |   |
|
|
|
Query Sequence |   |
Q | Q | P |
Query Conservation |   |
  |   |   |
Alig confidence |   |
|
|
|
Template Conservation |   |
|
|   |
Template Sequence |   |
D | T | L |
Template Known Secondary structure |   |
 |  |  |
Template Predicted Secondary structure |   |
 |  |  |
Template SS confidence |   |
|
|
|
  |   |
347 | . | . |
  |
No model constructed - rank, confidence too low
Phyre is for academic use only
Please cite: Protein structure prediction on
the web: a case study using the Phyre server |
Kelley LA and Sternberg MJE. Nature Protocols
4, 363 - 371 (2009) [pdf] [Import into BibTeX] |
  |
|
|