Job Description P76017 Confidence 43.03% Date Thu Jan 5 12:17:29 GMT 2012 Rank 49 Aligned Residues 243 % Identity 12% Template d1by5a_ SCOP info Transmembrane beta-barrels Porins Ligand-gated protein channel Resolution 2.60

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		693	.	.	.	.	.	.	700	.	.	.	.	.	.	.	.	.	710	.	.	.	.	.	.	.	.	.	720	.	.	.	.	.	.	.	.	.	730	.	.	.	.	.	.	.	.	.	740	.	.	.	.	.	.	.	.	.	750	.	.					.	.	.	.	.	.	.	760	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																														.	.	.	.
Query SS confidence																																																														.	.	.	.
Query Sequence		N	I	W	L	R	S	Y	G	G	S	L	D	S	F	A	S	G	K	L	S	G	F	D	M	G	Y	S	G	I	Q	F	G	G	D	K	R	L	S	D	V	M	P	L	Y	V	G	L	Y	I	G	S	T	H	A	S	P	D	Y	S	G	.	.	.	.	G	D	G	T	A	R	S	D	Y	M	G	M	Y	A	S	Y
Query Conservation																																																														.	.	.	.
Alig confidence																																																														.	.	.	.																.
Template Conservation																																																																																	.
Template Sequence		G	G	R	Y	D	W	A	D	Q	E	S	L	N	R	V	A	G	T	T	D	K	R	D	D	K	Q	F	T	W	R	G	G	V	N	Y	L	F	D	N	G	V	T	P	Y	F	S	Y	S	E	S	F	E	P	S	S	Q	V	G	K	D	G	N	I	F	A	P	S	K	G	K	Q	Y	E	V	G	V	K	Y	V	.
Template Known Secondary structure															T	T	T																						T	T	S																	B		T	T	S		B																	.
Template Predicted Secondary structure																																																																																	.
Template SS confidence
		450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.
		769	770	.	.	.	.	.	.	.	.	.	780	.	.	.	.	.	.	.	.	.	790	.	.	.	.	.	.	.	.	.	800	.	.	.	.	.	.	.	.	.	810	.	.	.	.	.	.	.	.	.	820	.	.	.	.	.	.	.	.	.	830	.	.	.	.	.	.	.	.	.	840	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		M	A	Q	N	G	F	Y	S	D	L	V	I	K	A	S	R	Q	K	N	S	F	H	V	L	D	S	Q	N	N	G	V	N	A	N	G	T	A	N	G	M	S	I	S	L	E	A	G	Q	R	F	N	L	S	P	T	G	Y	G	F	Y	I	E	P	Q	T	Q	L	T	Y	S	H	Q	N	E	M	T	M	K	A	S
Query Conservation
Alig confidence																																																							.	.	.	.	.	.	.
Template Conservation																																																							.	.	.	.	.	.	.
Template Sequence		P	E	D	R	P	I	V	V	T	G	A	V	Y	N	L	T	K	T	N	N	L	M	A	D	P	E	G	S	F	F	S	V	E	G	G	E	I	R	A	R	G	V	E	I	E	A	K	R	P	L	S	A	S	.	.	.	.	.	.	.	V	N	V	V	G	S	Y	T	Y	T	D	A	E	Y	T	T	D	T	T	Y
Template Known Secondary structure			S	S	S																					S	S			S																					S	S	S	S	.	.	.	.	.	.	.																		T	T	T
Template Predicted Secondary structure																																																							.	.	.	.	.	.	.
Template SS confidence
		529	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.								.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.
		849	850	.	.	.	.	.	.	.	.	.	860	.	.	.	.	.	.	.	.	.	870	.	.	.	.	.	.	.	.	.		880	.	.	.	.	.	.	.	.	.	890	.	.	.	.	.	.	.	.	.	900	.	.	.	.	.	.	.	.	.	910	.	.	.	.	.	.	.	.	.	920	.	.	.	.	.	.
Predicted Secondary structure																																	.																																																.
Query SS confidence																																	.																																																.
Query Sequence		N	G	L	N	I	H	L	N	H	Y	E	S	L	L	G	R	A	S	M	I	L	G	Y	D	I	T	A	G	N	S	Q	.	L	N	V	Y	V	K	T	G	A	I	R	E	F	S	G	D	T	E	Y	L	L	N	N	S	R	E	K	Y	S	F	K	G	N	G	W	N	N	G	V	G	V	S	A	Q	Y	N	K	.
Query Conservation																																	.																																																.
Alig confidence													.	.	.	.																	.																			.	.	.	.	.	.	.	.																						.
Template Conservation													.	.	.	.																																				.	.	.	.	.	.	.	.
Template Sequence		K	G	N	T	P	A	Q	V	P	K	H	.	.	.	.	M	A	S	L	W	A	D	Y	T	F	F	D	G	P	L	S	G	L	T	L	G	T	G	G	R	Y	T	G	S	S	Y	G	D	P	A	.	.	.	.	.	.	.	.	N	S	F	K	V	G	S	Y	T	V	V	D	A	L	V	R	Y	D	L	A	R	V
Template Known Secondary structure		T	T				T	T			S		.	.	.	.												S	S	T	T	T	T															S	S	T	T	.	.	.	.	.	.	.	.			S																T	T	T	T
Template Predicted Secondary structure													.	.	.	.																																				.	.	.	.	.	.	.	.
Template SS confidence
		602	.	.	.	.	.	.	.	610	.	.					.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.	.	.	.	.	.	.	.	.	640	.	.	.	.	.	.	.									.	.	650	.	.	.	.	.	.	.	.	.	660	.	.	.	.	.	.	.	.	.
					927	.	.	930	.	.	.	.	.	.	.	.	.	940	.	.	.	.	.														.	.	.	.	950	.	.	.	.	.
Predicted Secondary structure		.	.	.																				.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence		.	.	.																				.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		.	.	.	Q	H	T	F	Y	L	E	A	D	Y	T	Q	G	N	L	F	D	Q	K	.	.	.	.	.	.	.	.	.	.	.	.	.	Q	V	N	G	G	Y	R	F	S	F
Query Conservation		.	.	.																				.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.																				.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		G	M	A	G	S	N	V	A	L	H	V	N	N	L	F	D	R	E	Y	V	A	S	C	F	N	T	Y	G	C	F	W	G	A	E	R	Q	V	V	A	T	A	T	F	R	F
Template Known Secondary structure		T		T	T									S	T	T											T	T
Template Predicted Secondary structure
Template SS confidence
		670	.	.	.	.	.	.	.	.	.	680	.	.	.	.	.	.	.	.	.	690	.	.	.	.	.	.	.	.	.	700	.	.	.	.	.	.	.	.	.	710	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions