Job Description P76017 Confidence 93.17% Date Thu Jan 5 12:17:29 GMT 2012 Rank 40 Aligned Residues 586 % Identity 13% Template c3syjA_ PDB info PDB header:cell adhesion Chain: A: PDB Molecule:adhesion and penetration protein autotransporter; PDBTitle: crystal structure of the haemophilus influenzae hap adhesin Resolution 2.20 Å

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		22	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	P	S	I	Q	L	I	K	F	G	A	I	G	L	N	A	I	I	F	S	P	L	L	I	A	A	D	T	G	S	Q	Y	G	T	N	I	T	I	N	D	G	D	R	I	T	G	D	T	A	D	P	S	G	N	L	Y	G	V	M	T	P	A	G	N	T	P	G	N	I	N	L	G	N	D	V	T	V	N	V	N
Query Conservation
Alig confidence
Template Conservation
Template Sequence		N	G	E	T	L	Y	F	M	D	Q	K	Q	G	S	L	I	F	A	S	D	I	N	Q	G	A	G	G	L	Y	F	E	G	N	F	T	V	S	P	N	S	N	Q	T	W	Q	G	A	G	I	H	V	S	E	N	S	T	V	T	W	K	V	N	G	V	E	H	D	R	L	S	K	I	G	K	G	T	L	H	V	Q
Template Known Secondary structure		T									S	S							S	S					T	T							S							S	S	S		B			S	S						T	T								B			T	T							S	S	S
Template Predicted Secondary structure
Template SS confidence
		361	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440
		102	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	A	S	G	Y	A	K	G	I	I	I	Q	G	K	N	S	S	L	T	A	N	R	L	T	V	D	V	V	G	Q	T	S	A	I	G	I	N	L	I	G	D	Y	T	H	A	D	L	G	T	G	S	T	I	K	S	N	D	D	G	I	I	I	G	H	S	S	T	L	T	A	T	Q	F	T	I	E	N	S	N	G
Query Conservation
Alig confidence							.
Template Conservation							.
Template Sequence		A	K	G	E	N	.	K	G	S	I	S	V	G	D	G	K	V	I	L	E	Q	Q	A	D	D	Q	G	N	K	Q	A	F	S	E	I	G	L	V	S	G	R	G	T	V	Q	L	N	D	D	K	Q	F	D	T	D	K	F	Y	F	G	F	R	G	G	R	L	D	L	N	G	H	S	L	T	F	K	R	I	Q	N
Template Known Secondary structure			B	S	B		.																B			T	T				B	S		S														S	S	S	S		S		G	G	G					T	T							T	T						S	S
Template Predicted Secondary structure							.
Template SS confidence
		441	.	.	.	.		.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.
		182	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.
Predicted Secondary structure
Query SS confidence
Query Sequence		I	G	L	T	I	N	D	Y	G	T	S	V	D	L	G	S	G	S	K	I	T	T	D	G	S	T	G	V	Y	I	G	G	L	N	G	N	N	A	N	G	A	A	R	F	T	A	T	D	L	T	I	D	V	Q	G	Y	S	A	M	G	I	N	V	Q	K	N	S	V	V	D	L	G	T	N	S	T	I	K	T	N
Query Conservation
Alig confidence
Template Conservation
Template Sequence		T	D	E	G	A	M	I	V	N	H	N	T	T	Q	A	A	N	V	T	I	T	G	N	E	S	I	V	L	P	N	G	N	N	I	N	K	L	D	Y	R	K	E	I	A	Y	N	G	W	F	G	E	T	D	K	N	K	H	N	G	R	L	N	L	I	Y	K	P	T	T	E	D	R	T	L	L	L	S	G	G	T
Template Known Secondary structure			S	T	T								S	S	S										S			S				S	S				G	G	G	G		S						S			S				T	T	S												S	S	S	S							S
Template Predicted Secondary structure
Template SS confidence
		520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.
		262	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	D	N	A	H	G	L	W	S	F	G	Q	V	S	A	N	A	L	T	V	D	V	T	G	A	A	A	N	G	V	E	V	R	G	G	T	T	T	I	G	A	D	S	H	I	S	S	A	Q	G	G	G	L	V	T	S	G	S	D	A	I	I	N	F	T	G	T	A	A	Q	R	N	S	I	F	S	G	G	S	Y
Query Conservation
Alig confidence
Template Conservation
Template Sequence		N	L	K	G	D	I	T	Q	T	K	G	K	L	F	F	S	G	R	P	T	P	H	A	Y	N	H	L	N	K	R	W	S	E	M	E	G	I	P	Q	G	E	I	V	W	D	H	D	W	I	N	R	T	F	K	A	E	N	F	Q	I	K	G	G	S	A	V	V	S	R	N	V	S	S	I	E	G	N	W	T	V
Template Known Secondary structure				S	S						S	S														B											T			S	B					T	T																S	S						S	S
Template Predicted Secondary structure
Template SS confidence
		600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.	.	.	.	.	.	.	.	.	640	.	.	.	.	.	.	.	.	.	650	.	.	.	.	.	.	.	.	.	660	.	.	.	.	.	.	.	.	.	670	.	.	.	.	.	.	.	.	.
		342	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	A	S	A	Q	T	A	T	A	V	V	N	M	Q	N	T	D	I	T	V	D	R	N	G	S	L	A	L	G	L	W	A	L	S	G	G	R	I	T	G	D	S	L	A	I	T	G	A	A	G	A	R	G	I	Y	A	M	T	N	S	Q	I	D	L	T	S	D	L	V	I	D	M	S	T	P	D	Q	M	A	I
Query Conservation
Alig confidence
Template Conservation
Template Sequence		S	N	N	A	N	A	T	F	G	V	V	P	N	Q	Q	N	T	I	C	T	R	S	D	W	T	G	L	T	T	C	Q	K	V	D	L	T	D	T	K	V	I	N	S	I	P	K	T	Q	I	N	G	S	I	N	L	T	D	N	A	T	A	N	V	K	G	L	A	K	L	N	G	N	V	T	L	T	N	H	S	Q
Template Known Secondary structure			T	T									T	T	S									T	T	T																			S							S						T	T							S	S					S						T	T
Template Predicted Secondary structure
Template SS confidence
		680	.	.	.	.	.	.	.	.	.	690	.	.	.	.	.	.	.	.	.	700	.	.	.	.	.	.	.	.	.	710	.	.	.	.	.	.	.	.	.	720	.	.	.	.	.	.	.	.	.	730	.	.	.	.	.	.	.	.	.	740	.	.	.	.	.	.	.	.	.	750	.	.	.	.	.	.	.	.	.
		422	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.		.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500
Predicted Secondary structure																																																											.
Query SS confidence																																																											.
Query Sequence		A	T	Q	H	D	D	G	Y	A	A	S	R	I	N	A	S	G	R	M	L	I	N	G	S	V	L	S	K	G	G	L	I	N	L	D	M	H	P	G	S	V	W	T	G	S	S	L	S	D	N	V	N	G	G	K	L	D	.	V	A	M	N	N	S	V	W	N	V	T	S	N	S	N	L	D	T	L	A	L	S
Query Conservation																																																											.
Alig confidence																																																											.
Template Conservation
Template Sequence		F	T	L	S	N	N	A	T	Q	I	G	N	I	R	L	S	D	N	S	T	A	T	V	D	N	A	N	L	N	G	N	V	H	L	T	D	S	A	Q	F	S	L	K	N	S	H	F	S	H	Q	I	Q	G	D	K	G	T	T	V	T	L	E	N	A	T	W	T	M	P	S	D	T	T	L	Q	N	L	T	L	N
Template Known Secondary structure						T	T					S						T	T							S	S				S						T	T							S					S						T	T							S							S					S
Template Predicted Secondary structure
Template SS confidence
		760	.	.	.	.	.	.	.	.	.	770	.	.	.	.	.	.	.	.	.	780	.	.	.	.	.	.	.	.	.	790	.	.	.	.	.	.	.	.	.	800	.	.	.	.	.	.	.	.	.	810	.	.	.	.	.	.	.	.	.	820	.	.	.	.	.	.	.	.	.	830	.	.	.	.	.	.	.	.	.
		501	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580
Predicted Secondary structure
Query SS confidence
Query Sequence		H	S	T	V	D	F	A	S	H	G	S	T	A	G	T	F	A	T	L	N	V	E	N	L	S	G	N	S	T	F	I	M	R	A	D	V	V	G	E	G	N	G	V	N	N	K	G	D	L	L	N	I	S	G	S	S	A	G	N	H	V	L	A	I	R	N	Q	G	S	E	A	T	T	G	N	E	V	L	T	V
Query Conservation
Alig confidence												.	.	.	.	.	.	.	.																																																							.
Template Conservation												.	.	.	.	.	.	.	.																																																							.
Template Sequence		N	S	T	I	T	L	N	S	A	Y	.	.	.	.	.	.	.	.	S	R	F	N	T	L	T	V	N	G	K	L	S	G	Q	G	T	F	Q	F	T	S	S	L	F	G	Y	K	S	D	K	L	K	L	S	N	D	A	E	G	D	Y	I	L	S	V	R	N	T	G	K	E	P	E	.	T	L	E	Q	L	T	L
Template Known Secondary structure							S		G	G	G	.	.	.	.	.	.	.	.										S														T	T	T	T									T	T													S				S	.	S
Template Predicted Secondary structure												.	.	.	.	.	.	.	.																																																							.
Template SS confidence
		840	.	.	.	.	.	.	.	.	.									850	.	.	.	.	.	.	.	.	.	860	.	.	.	.	.	.	.	.	.	870	.	.	.	.	.	.	.	.	.	880	.	.	.	.	.	.	.	.	.	890	.	.	.	.	.	.	.	.	.	900	.	.	.		.	.	.	.	.	.	910
		581	.	.	.	.	.	.	.	.	590	.							.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.
Predicted Secondary structure													.	.	.	.	.	.
Query SS confidence													.	.	.	.	.	.
Query Sequence		V	K	T	T	D	G	A	A	S	F	S	.	.	.	.	.	.	A	S	S	Q	V	E	L	G	G	Y	L	Y	D	V	R	K	N	G	T	N	W	E	L	Y	A	S
Query Conservation													.	.	.	.	.	.
Alig confidence													.	.	.	.	.	.
Template Conservation
Template Sequence		V	E	S	K	D	N	Q	P	L	S	D	K	L	K	F	T	L	E	N	D	H	V	D	A	G	A	L	R	Y	K	L	V	K	N	D	G	E	F	R	L	H	N	P
Template Known Secondary structure					S	S	S	S				T	T						T	T	S					T	T									T	T
Template Predicted Secondary structure
Template SS confidence
		934	.	.	.	.	.	940	.	.	.	.	.	.	.	.	.	950	.	.	.	.	.	.	.	.	.	960	.	.	.	.	.	.	.	.	.	970	.	.	.	.	.	.