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Job DescriptionP76017
Confidence18.83%DateThu Jan 5 12:17:29 GMT 2012
Rank52Aligned Residues217
% Identity12%Templatec3rbhC_
PDB info PDB header:transport proteinChain: C: PDB Molecule:alginate production protein alge; PDBTitle: structure of alginate export protein alge from pseudomonas aeruginosa
Resolution2.30 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   715....720.........730.........740.........750.........760.........770.........780.........790....
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Query Sequence  DMGYSGIQFGGDKRLSDVMPLYVGLYIGSTHASPDYSGGDGTARSDYMGMYASYMAQNGFYSDLVIKASRQKNSFHVLDS
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Template Sequence  DKDRTHVFGDISTQWAPHHRIGVRIHH. ADDSDKTYTGQLTWLGIEATGDAYNYRSSXPLNYWASATWLTGDRDN. . . . .
Template Known Secondary structure  TTTTT.


SSTT
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   201........210.........220....... ..230.........240.........250.........260.........270....
 
   795....800.........810.........820.........830.........840.........
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Query Sequence  QNNGVNANGTANGMSISLEAGQRFNLSPTGYGFYIEPQTQLTYSHQNEMTMKASN. . . . . . . . . . . . . . . . . . . . . . . . .
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Template Sequence  . . . . LTQSGDVNAFG. . VDLGLRWNID. . . . . . . EQWKAGVGYARGSGGGKDGEEQFQQTGLESNRSNFTGTRSRVHRFG
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S.......SS


SGGGTT




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   288.290........ .300........ .310.........320.........330.........340.........350....
 
   850.........860.........870.........880.........890.........900.........910.........920........
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Query Sequence  . GLNIHLNHYESLLGRASMILGYDITAGNSQLNVYVKTGAIREFSGDTEYLLNNSREKYSFKGNGWNNGVGVSAQYNKQH
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Template Sequence  EAFRGELSNLQAATLFGSWQLREDY. . . . . DASLVYHKFWRVDDDSDIGTSGINAALQPGEKDIGQELDLVVTKYFKQGL
Template Known Secondary structure  TTT


SSSTTT.....SSTTS




S





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   368.370.........380.........390.. .......400.........410.........420.........430.........440..
 
   929930........ .940.........950.....
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Query Sequence  . . . . . . . . . . . . . . TFYLEADYTQ. . . . . . . GNLFDQKQVNGGYRFSF
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Template Sequence  LPASXSQYVDEPSALIRFRGGLFKPGDAYGPGTDSTXHRAFVDFIWRF
Template Known Secondary structure 

TTSGGGGT
SSS
TTS
TTS
S

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   443......450.........460.........470.........480.........490
 
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No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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