Job Description P76017 Confidence 100.00% Date Thu Jan 5 12:17:29 GMT 2012 Rank 5 Aligned Residues 243 % Identity 26% Template c3qq2C_ PDB info PDB header:membrane protein/protein transport Chain: C: PDB Molecule:brka autotransporter; PDBTitle: crystal structure of the beta domain of the bordetella autotransporter2 brka Resolution 3.00 Å

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		691	.	.	.	.	.	.	.	.	700	.	.	.	.	.	.	.	.	.	710	.	.	.	.	.	.	.	.	.	720	.	.	.	.	.	.	.	.	.	730	.	.				.	.	.	.	.	.	.	740	.	.	.	.	.	.	.	.	.	750	.	.	.	.	.	.	.	.	.	760	.	.	.	.	.	.	.
Predicted Secondary structure																																												.	.	.
Query SS confidence																																												.	.	.
Query Sequence		D	G	N	I	W	L	R	S	Y	G	G	S	L	D	S	F	A	S	G	K	L	S	G	F	D	M	G	Y	S	G	I	Q	F	G	G	D	K	R	L	S	D	V	.	.	.	M	P	L	Y	V	G	L	Y	I	G	S	T	H	A	S	P	D	Y	S	G	G	D	G	T	A	R	S	D	Y	M	G	M	Y	A	S
Query Conservation																																												.	.	.
Alig confidence																		.	.	.	.	.																						.	.	.																			.
Template Conservation																		.	.	.	.	.																																											.
Template Sequence		A	G	G	P	W	A	R	T	F	S	E	R	Q	Q	I	S	.	.	.	.	.	N	A	Y	D	Q	T	V	S	G	L	E	I	G	L	D	R	G	W	S	A	S	G	G	R	W	Y	A	G	G	L	L	G	Y	T	Y	A	D	R	T	Y	P	G	.	D	G	G	G	K	V	K	G	L	H	V	G	G	Y	A	A
Template Known Secondary structure																		.	.	.	.	.																					T	T																		B	T	T	.	T	B
Template Predicted Secondary structure																		.	.	.	.	.																																											.
Template SS confidence
		746	.	.	.	750	.	.	.	.	.	.	.	.	.	760	.						.	.	.	.	.	.	.	.	770	.	.	.	.	.	.	.	.	.	780	.	.	.	.	.	.	.	.	.	790	.	.	.	.	.	.	.	.	.	800	.	.	.		.	.	.	.	.	.	810	.	.	.	.	.	.	.	.	.
		768	.	770	.	.	.	.	.	.	.	.	.	780	.	.	.	.	.	.	.	.	.	790	.	.	.	.	.	.	.	.	.	800	.	.	.	.	.	.	.	.	.	810	.	.	.	.	.	.	.	.	.	820	.	.	.	.	.	.	.	.	.	830	.	.	.	.	.	.	.	.	.	840	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Y	M	A	Q	N	G	F	Y	S	D	L	V	I	K	A	S	R	Q	K	N	S	F	H	V	L	D	S	Q	N	N	G	V	N	A	N	G	T	A	N	G	M	S	I	S	L	E	A	G	Q	R	F	N	L	S	P	T	G	Y	G	F	Y	I	E	P	Q	T	Q	L	T	Y	S	H	Q	N	E	M	T	M	K	A
Query Conservation
Alig confidence																																																									.	.	.
Template Conservation																																																									.	.	.
Template Sequence		Y	V	G	D	G	G	Y	Y	L	D	T	V	L	R	L	G	R	Y	D	Q	Q	Y	N	I	A	G	T	D	G	G	R	V	T	A	D	Y	R	T	S	G	A	A	W	S	L	E	G	G	R	R	F	E	L	P	N	.	.	.	D	W	F	A	E	P	Q	A	E	V	M	L	W	R	T	S	G	K	R	Y	R	A
Template Known Secondary structure					S	S	S	B																				S	S	S																				B					G	G	.	.	.	G
Template Predicted Secondary structure																																																									.	.	.
Template SS confidence
		824	.	.	.	.	.	830	.	.	.	.	.	.	.	.	.	840	.	.	.	.	.	.	.	.	.	850	.	.	.	.	.	.	.	.	.	860	.	.	.	.	.	.	.	.	.	870	.	.	.	.	.	.	.	.				.	880	.	.	.	.	.	.	.	.	.	890	.	.	.	.	.	.	.	.	.	900
		848	.	850	.	.	.	.	.	.	.	.	.	860	.	.	.	.	.	.	.	.	.	870	.	.	.	.	.	.	.	.		.	880	.	.	.	.	.	.	.	.	.	890	.	.	.	.	.	.	.	.	.	900	.	.	.	.	.	.	.	.	.	910	.	.	.	.	.	.	.	.	.	920	.	.	.	.	.	.
Predicted Secondary structure																																	.
Query SS confidence																																	.
Query Sequence		S	N	G	L	N	I	H	L	N	H	Y	E	S	L	L	G	R	A	S	M	I	L	G	Y	D	I	T	A	G	N	S	.	Q	L	N	V	Y	V	K	T	G	A	I	R	E	F	S	G	D	T	E	Y	L	L	N	N	S	R	E	K	Y	S	F	K	G	N	G	W	N	N	G	V	G	V	S	A	Q	Y	N	K
Query Conservation																																	.
Alig confidence																																	.																				.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																																					.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		S	N	G	L	R	V	K	V	D	A	N	T	A	T	L	G	R	L	G	L	R	F	G	R	R	I	A	L	A	G	G	N	I	V	Q	P	Y	A	R	L	G	W	T	Q	E	F	K	S	T	G	R	.	.	.	.	.	.	.	.	.	.	.	.	.	H	G	R	V	E	L	G	A	G	V	D	A	A	L	G	K
Template Known Secondary structure		S	S	S																										T	T	S																					.	.	.	.	.	.	.	.	.	.	.	.	.	B														G	G
Template Predicted Secondary structure																																																					.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		901	.	.	.	.	.	.	.	.	910	.	.	.	.	.	.	.	.	.	920	.	.	.	.	.	.	.	.	.	930	.	.	.	.	.	.	.	.	.	940	.	.	.	.	.	.	.	.	.	950	.														.	.	.	.	.	.	.	.	960	.	.	.	.	.	.	.
		927	.	.	930	.	.	.	.	.	.	.	.	.	940	.	.	.	.	.	.		.	.	.	950	.	.	.	.	.
Predicted Secondary structure																						.
Query SS confidence																						.
Query Sequence		Q	H	T	F	Y	L	E	A	D	Y	T	Q	G	N	L	F	D	Q	K	Q	.	V	N	G	G	Y	R	F	S	F
Query Conservation																						.
Alig confidence																						.
Template Conservation
Template Sequence		G	H	N	L	Y	A	S	Y	E	Y	A	A	G	D	R	I	N	I	P	W	S	F	H	A	G	Y	R	Y	S	F
Template Known Secondary structure		G	B												S	S													B
Template Predicted Secondary structure
Template SS confidence
		981	.	.	.	.	.	.	.	.	990	.	.	.	.	.	.	.	.	.	1000	.	.	.	.	.	.	.	.	.	1010

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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