Job Description P76017 Confidence 99.18% Date Thu Jan 5 12:17:29 GMT 2012 Rank 12 Aligned Residues 134 % Identity 21% Template c3nb3C_ PDB info PDB header:virus Chain: C: PDB Molecule:outer membrane protein a; PDBTitle: the host outer membrane proteins ompa and ompc are packed at specific2 sites in the shigella phage sf6 virion as structural components Resolution 19.00 Å

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		770	.	.	.	.	.	.	.	.	.	780	.	.	.	.	.	.	.	.	.	790	.	.	.	.	.	.	.	.	.	800	.	.	.	.	.	.	.	.	.	810	.	.	.	.	.	.	.	.	.	820	.	.	.	.	.	.	.	.	.	830	.	.	.	.	.	.	.	.	.	840	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	Q	N	G	F	Y	S	D	L	V	I	K	A	S	R	Q	K	N	S	F	H	V	L	D	S	Q	N	N	G	V	N	A	N	G	T	A	N	G	M	S	I	S	L	E	A	G	Q	R	F	N	L	S	P	T	G	Y	G	F	Y	I	E	P	Q	T	Q	L	T	Y	S	H	Q	N	E	M	T	M	K	A	S	N
Query Conservation
Alig confidence																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.															.	.	.	.	.					.	.	.	.												.	.	.	.
Template Conservation																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.															.	.	.	.	.					.	.	.	.												.	.	.	.
Template Sequence		K	D	N	T	W	Y	T	G	A	K	L	G	W	S	Q	H	E	N	K	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	L	G	A	G	A	F	G	G	Y	Q	V	N	P	Y	.	.	.	.	.	V	G	F	E	.	.	.	.	M	G	Y	D	W	L	G	R	M	P	Y	.	.	.	.
Template Known Secondary structure			T	T																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.													T	T	.	.	.	.	.					.	.	.	.												.	.	.	.
Template Predicted Secondary structure																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.															.	.	.	.	.					.	.	.	.												.	.	.	.
Template SS confidence
		3	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.																				.	.	.	.	.	.	.	.	30	.	.	.	.	.						.	.	.	.					40	.	.	.	.	.	.	.	.	.	50
		850	.	.	.	.	.	.	.	.	.	860	.	.	.	.	.	.	.	.	.	870	.	.	.	.	.	.	.	.	.	880	.	.	.	.	.	.	.	.	.	890	.	.	.	.	.	.	.	.	.	900	.	.	.	.	.	.	.	.	.	910	.	.	.	.	.	.	.	.	.	920	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	L	N	I	H	L	N	H	Y	E	S	L	L	G	R	A	S	M	I	L	G	Y	D	I	T	A	G	N	S	Q	L	N	V	Y	V	K	T	G	A	I	R	E	F	S	G	D	T	E	Y	L	L	N	N	S	R	E	K	Y	S	F	K	G	N	G	W	N	N	G	V	G	V	S	A	Q	Y	N	K	Q	H	T
Query Conservation
Alig confidence		.	.	.	.	.	.	.																		.	.	.																		.	.	.	.
Template Conservation		.	.	.	.	.	.	.																		.	.	.																		.	.	.	.
Template Sequence		.	.	.	.	.	.	.	A	Y	K	A	Q	G	V	Q	L	T	A	K	L	G	Y	P	I	.	.	.	T	D	D	L	D	I	Y	T	R	L	G	G	M	V	W	R	A	.	.	.	.	D	T	Y	S	N	V	Y	G	K	N	H	D	T	G	V	S	P	V	F	A	G	G	V	E	Y	A	I	T	P	E	I	A
Template Known Secondary structure		.	.	.	.	.	.	.																	S	.	.	.	S	S	S															.	.	.	.					S	S	S																						T	T
Template Predicted Secondary structure		.	.	.	.	.	.	.																		.	.	.																		.	.	.	.
Template SS confidence
									71	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.				.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.					.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.
		930	.	.	.	.	.	.	.	.	.	940	.	.	.	.	.	.	.	.	.	950	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		F	Y	L	E	A	D	Y	T	Q	G	N	L	F	D	Q	K	Q	V	N	G	G	Y	R	F	S	F
Query Conservation
Alig confidence										.	.	.	.	.	.
Template Conservation										.	.	.	.	.	.
Template Sequence		T	R	L	E	Y	Q	W	T	.	.	.	.	.	.	N	G	M	L	S	L	G	V	S	Y	R	F
Template Known Secondary structure										.	.	.	.	.	.
Template Predicted Secondary structure										.	.	.	.	.	.
Template SS confidence
		137	.	.	140	.	.	.	.							.	.	.	.	.	150	.	.	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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