Job Description P76017 Confidence 3.73% Date Thu Jan 5 12:17:29 GMT 2012 Rank 86 Aligned Residues 163 % Identity 15% Template c3jtyB_ PDB info PDB header:transport protein Chain: B: PDB Molecule:benf-like porin; PDBTitle: crystal structure of a benf-like porin from pseudomonas fluorescens2 pf-5 Resolution 2.58 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		757	.	.	760	.	.	.	.	.	.	.	.	.	770	.	.	.	.	.	.	.	.	.	780	.	.	.	.	.	.	.	.	.	790	.	.	.	.	.	.	.	.	.	800	.	.	.	.	.	.	.	.	.	810	.	.	.	.	.	.	.	.	.	820	.	.	.	.	.	.	.	.	.	830	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	R	S	D	Y	M	G	M	Y	A	S	Y	M	A	Q	N	G	F	Y	S	D	L	V	I	K	A	S	R	Q	K	N	S	F	H	V	L	D	S	Q	N	N	G	V	N	A	N	G	T	A	N	G	M	S	I	S	L	E	A	G	Q	R	F	N	L	S	P	T	G	Y	G	F	Y	I	E	P	Q	T	Q	L	T
Query Conservation
Alig confidence																		.																.	.	.	.	.	.	.																						.	.	.	.	.	.	.	.					.	.	.	.
Template Conservation																		.																.	.	.	.	.	.	.																						.	.	.	.	.	.	.	.					.	.	.	.
Template Sequence		Y	S	Q	Q	F	I	N	L	I	H	S	Q	P	L	G	D	.	W	T	L	G	A	N	L	G	F	F	Y	G	K	E	D	.	.	.	.	.	.	.	G	S	A	R	A	G	D	M	E	N	R	T	W	S	G	L	F	S	A	K	Y	.	.	.	.	.	.	.	.	G	G	N	T	.	.	.	.	F	Y	V	G
Template Known Secondary structure																S	S	.																.	.	.	.	.	.	.	T	T		T	T																	.	.	.	.	.	.	.	.	T	T			.	.	.	.
Template Predicted Secondary structure																		.																.	.	.	.	.	.	.																						.	.	.	.	.	.	.	.					.	.	.	.
Template SS confidence
		234	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.		250	.	.	.	.	.	.	.	.	.	260	.	.	.	.								.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.									.	.	.	.					290	.	.	.
		837	.	.	840	.	.	.	.	.	.	.	.	.	850														.	.	.	.	.	.	.	.	.	860	.	.	.	.	.	.	.	.	.	870	.	.	.	.	.	.	.	.	.		880	.	.	.	.	.	.	.	.	.	890	.	.	.	.	.	.	.	.	.	900	.	.
Predicted Secondary structure																.	.	.	.	.	.	.	.	.	.	.	.	.																														.
Query SS confidence																.	.	.	.	.	.	.	.	.	.	.	.	.																														.
Query Sequence		Y	S	H	Q	N	E	M	T	M	K	A	S	N	G	.	.	.	.	.	.	.	.	.	.	.	.	.	L	N	I	H	L	N	H	Y	E	S	L	L	G	R	A	S	M	I	L	G	Y	D	I	T	A	G	N	S	Q	.	L	N	V	Y	V	K	T	G	A	I	R	E	F	S	G	D	T	E	Y	L	L	N	N
Query Conservation																.	.	.	.	.	.	.	.	.	.	.	.	.																														.
Alig confidence																.	.	.	.	.	.	.	.	.	.	.	.	.													.	.	.	.														.																				.	.	.	.
Template Conservation																																									.	.	.	.																																		.	.	.	.
Template Sequence		L	Q	K	L	T	G	D	S	A	W	M	R	V	N	G	T	S	G	G	T	L	A	N	D	S	Y	N	A	S	Y	D	N	A	K	E	K	S	W	Q	.	.	.	.	V	R	H	D	Y	N	F	A	A	L	G	V	P	G	L	T	L	M	N	R	Y	I	S	G	S	N	V	H	T	A	T	V	S	.	.	.	.
Template Known Secondary structure								S	S					B	T	T				T	T	S	T	T			S	S					S	T	T						.	.	.	.							T	T	T	T	T		T	T																T	T			.	.	.	.
Template Predicted Secondary structure																																									.	.	.	.																																		.	.	.	.
Template SS confidence
		294	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.					.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.
		903	.	.	.	.	.	.	910	.	.	.	.	.	.	.	.	.	920	.	.	.	.	.					.	.	.	.	930	.	.	.	.	.	.	.	.					.	940	.	.	.	.	.	.	.	.	.	950	.	.	.	.
Predicted Secondary structure																									.	.	.	.														.	.	.	.
Query SS confidence																									.	.	.	.														.	.	.	.
Query Sequence		S	R	E	K	Y	S	F	K	G	N	G	W	N	N	G	V	G	V	S	A	Q	Y	N	.	.	.	.	K	Q	H	T	F	Y	L	E	A	D	Y	T	Q	.	.	.	.	G	N	L	F	D	Q	K	Q	V	N	G	G	Y	R	F	S
Query Conservation																									.	.	.	.														.	.	.	.
Alig confidence		.	.	.	.	.	.	.																	.	.	.	.														.	.	.	.
Template Conservation		.	.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	D	G	K	E	W	G	R	E	S	E	V	A	Y	T	V	Q	S	G	T	L	K	N	L	N	L	K	W	R	N	S	T	M	R	R	D	F	S	N	N	E	F	D	E	N	R	L	I	I	S	Y	P	L	S
Template Known Secondary structure		.	.	.	.	.	.	.																	S	S	S	S	T	T													S	S		S
Template Predicted Secondary structure		.	.	.	.	.	.	.
Template SS confidence
									366	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions