Job Description P76017 Confidence 94.80% Date Thu Jan 5 12:17:29 GMT 2012 Rank 37 Aligned Residues 577 % Identity 14% Template c3h09B_ PDB info PDB header:hydrolase Chain: B: PDB Molecule:immunoglobulin a1 protease; PDBTitle: the structure of haemophilus influenzae iga1 protease Resolution 1.75 Å

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		29	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.				.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.
Predicted Secondary structure																																					.	.	.
Query SS confidence																																					.	.	.
Query Sequence		K	F	G	A	I	G	L	N	A	I	I	F	S	P	L	L	I	A	A	D	T	G	S	Q	Y	G	T	N	I	T	I	N	D	G	D	.	.	.	R	I	T	G	D	T	A	D	P	S	G	N	L	Y	G	V	M	T	P	A	G	N	T	P	G	N	I	N	L	G	N	D	V	T	V	N	V	N	D	A	S	G
Query Conservation																																					.	.	.
Alig confidence																																					.	.	.
Template Conservation
Template Sequence		S	V	T	L	R	G	S	G	T	L	T	L	N	N	N	I	D	Q	G	A	G	G	L	F	F	E	G	D	Y	E	V	K	G	T	S	D	S	T	T	W	K	G	A	G	V	S	V	A	D	G	K	T	V	T	W	K	V	H	N	P	K	S	D	R	L	A	K	I	G	K	G	T	L	I	V	E	G	K	G	E
Template Known Secondary structure														S	S					T	T														S	S	T	T		B			S	S						T	T								B			T	T							S	S	S							B	S	B
Template Predicted Secondary structure
Template SS confidence
		388	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.
		106	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150							.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																															.	.	.	.	.	.
Query SS confidence																																															.	.	.	.	.	.
Query Sequence		Y	A	K	G	I	I	I	Q	G	K	N	S	S	L	T	A	N	R	L	T	V	D	V	V	G	Q	T	S	A	I	G	I	N	L	I	G	D	Y	T	H	A	D	L	G	T	.	.	.	.	.	.	G	S	T	I	K	S	N	D	D	G	I	I	I	G	H	S	S	T	L	T	A	T	Q	F	T	I	E	N	S
Query Conservation																																															.	.	.	.	.	.
Alig confidence			.																																												.	.	.	.	.	.
Template Conservation			.
Template Sequence		N	.	K	G	S	L	K	V	G	D	G	T	V	I	L	K	Q	Q	A	D	A	N	N	K	V	K	A	F	S	Q	V	G	I	V	S	G	R	S	T	V	V	L	N	D	D	K	Q	V	D	P	N	S	I	Y	F	G	F	R	G	G	R	L	D	A	N	G	N	N	L	T	F	E	H	I	R	N	I	D	D	G
Template Known Secondary structure			.								S								B			T	T				B	S		S						S	S							S	S	T	T	S	S		G	G	G					T	T							T	T						S					S	S	T	T
Template Predicted Secondary structure			.
Template SS confidence
		468		.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.
		180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		N	G	I	G	L	T	I	N	D	Y	G	T	S	V	D	L	G	S	G	S	K	I	T	T	D	G	S	T	G	V	Y	I	G	G	L	N	G	N	N	A	N	G	A	A	R	F	T	A	T	D	L	T	I	D	V	Q	G	Y	S	A	M	G	I	N	V	Q	K	N	S	V	V	D	L	G	T	N	S	T	I	K
Query Conservation
Alig confidence																																																																									.	.	.
Template Conservation																																																																									.	.	.
Template Sequence		A	R	L	V	N	H	N	T	S	K	T	S	T	V	T	I	T	G	E	S	L	I	T	D	P	N	T	I	T	P	Y	N	I	D	A	P	D	E	D	N	P	Y	A	F	R	R	I	K	D	G	G	Q	L	Y	L	N	L	E	N	Y	T	Y	Y	A	L	R	K	G	A	S	T	.	.	.	R	S	E	L	P	K
Template Known Secondary structure									S	S	S															G	G	G											S	S		T	T	S						T	T		S	S				T	T	T	T							T	T			T	.	.	.	T	S				S
Template Predicted Secondary structure																																																																									.	.	.
Template SS confidence
		547	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.				.	.	620	.	.	.
		260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	N	G	D	N	A	H	G	L	W	S	F	G	Q	V	S	A	N	A	L	T	V	D	V	T	G	A	A	A	N	G	V	E	V	R	G	G	T	T	T	I	G	A	D	S	H	I	S	S	A	Q	G	G	G	L	V	T	S	G	S	D	A	I	I	N	F	T	G	T	A	A	Q	R	N	S	I	F	S	G	G
Query Conservation
Alig confidence
Template Conservation
Template Sequence		N	S	G	E	S	N	E	N	W	L	Y	M	G	K	T	S	D	E	A	K	R	N	V	M	N	H	I	N	N	E	R	M	N	G	F	N	G	Y	F	G	E	E	E	G	K	N	N	G	N	L	N	V	T	F	K	G	K	S	E	Q	N	R	F	L	L	T	G	G	T	N	L	N	G	D	L	K	V	E	K	G
Template Known Secondary structure		S	T	T				S	S						S	S																T				B		S			S			T	T	S												S	S	T	T							S					S	S							S
Template Predicted Secondary structure
Template SS confidence
		624	.	.	.	.	.	630	.	.	.	.	.	.	.	.	.	640	.	.	.	.	.	.	.	.	.	650	.	.	.	.	.	.	.	.	.	660	.	.	.	.	.	.	.	.	.	670	.	.	.	.	.	.	.	.	.	680	.	.	.	.	.	.	.	.	.	690	.	.	.	.	.	.	.	.	.	700	.	.	.
		340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.									.	.	.	.	410	.
Predicted Secondary structure																																																																				.	.	.	.	.	.	.	.
Query SS confidence																																																																				.	.	.	.	.	.	.	.
Query Sequence		S	Y	G	A	S	A	Q	T	A	T	A	V	V	N	M	Q	N	T	D	I	T	V	D	R	N	G	S	L	A	L	G	L	W	A	L	S	G	G	R	I	T	G	D	S	L	A	I	T	G	A	A	G	A	R	G	I	Y	A	M	T	N	S	Q	I	D	L	.	.	.	.	.	.	.	.	T	S	D	L	V	I
Query Conservation																																																																				.	.	.	.	.	.	.	.
Alig confidence																																																																				.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		T	L	F	L	S	G	R	P	T	P	H	A	R	D	I	A	G	I	S	S	T	K	K	D	Q	H	F	A	E	N	N	E	V	V	V	E	D	D	W	I	N	R	N	F	K	A	T	N	I	N	V	T	N	N	A	T	L	Y	S	G	R	N	V	A	N	I	T	S	N	I	T	A	S	D	N	A	K	V	H	I
Template Known Secondary structure																T	T	S				S				G	G	G		G	G	G					T	T																T	T							T	T												T	T
Template Predicted Secondary structure
Template SS confidence
		704	.	.	.	.	.	710	.	.	.	.	.	.	.	.	.	720	.	.	.	.	.	.	.	.	.	730	.	.	.	.	.	.	.	.	.	740	.	.	.	.	.	.	.	.	.	750	.	.	.	.	.	.	.	.	.	760	.	.	.	.	.	.	.	.	.	770	.	.	.	.	.	.	.	.	.	780	.	.	.
		412	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.			.	.	.	.	.	.	.	.
Predicted Secondary structure																																																																								.	.
Query SS confidence																																																																								.	.
Query Sequence		D	M	S	T	P	D	Q	M	A	I	A	T	Q	H	D	D	G	Y	A	A	S	R	I	N	A	S	G	R	M	L	I	N	G	S	V	L	S	K	G	G	L	I	N	L	D	M	H	P	G	S	V	W	T	G	S	S	L	S	D	N	V	N	G	G	K	L	D	V	A	M	.	.	N	N	S	V	W	N	V	T
Query Conservation																																																																								.	.
Alig confidence																																																																								.	.
Template Conservation
Template Sequence		G	Y	K	A	G	D	T	V	C	V	R	S	D	Y	T	G	Y	V	T	C	T	T	D	K	L	S	D	K	A	L	N	S	F	N	A	T	N	V	S	G	N	V	N	L	S	G	N	A	N	F	V	L	G	K	A	N	L	F	G	T	I	S	G	T	G	N	S	Q	V	R	L	T	E	N	S	H	W	H	L	T
Template Known Secondary structure		S	B		T	T								T	T	T								S								T	T	S							S						T	T						S	B					S						T	T							T	T						S
Template Predicted Secondary structure
Template SS confidence
		784	.	.	.	.	.	790	.	.	.	.	.	.	.	.	.	800	.	.	.	.	.	.	.	.	.	810	.	.	.	.	.	.	.	.	.	820	.	.	.	.	.	.	.	.	.	830	.	.	.	.	.	.	.	.	.	840	.	.	.	.	.	.	.	.	.	850	.	.	.	.	.	.	.	.	.	860	.	.	.
		490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.			510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.
Predicted Secondary structure																						.	.
Query SS confidence																						.	.
Query Sequence		S	N	S	N	L	D	T	L	A	L	S	H	S	T	V	D	F	A	S	H	.	.	G	S	T	A	G	T	F	A	T	L	N	V	E	N	L	S	G	N	S	T	F	I	M	R	A	D	V	V	G	E	G	N	G	V	N	N	K	G	D	L	L	N	I	S	G	S	S	A	G	N	H	V	L	A	I	R	N	Q
Query Conservation																						.	.
Alig confidence																						.	.																														.	.	.	.	.	.
Template Conservation																																																					.	.	.	.	.	.
Template Sequence		G	D	S	N	V	N	Q	L	N	L	D	K	G	H	I	H	L	N	A	Q	N	D	A	N	K	V	T	T	Y	N	T	L	T	V	N	S	L	S	G	N	G	S	F	Y	Y	L	T	D	L	S	N	.	.	.	.	.	.	K	Q	G	D	K	V	V	V	T	K	S	A	T	G	N	F	T	L	Q	V	A	D	K
Template Known Secondary structure		S																S	S	S				T	T	S																								G	G	G	.	.	.	.	.	.	T																						S
Template Predicted Secondary structure																																																					.	.	.	.	.	.
Template SS confidence
		864	.	.	.	.	.	870	.	.	.	.	.	.	.	.	.	880	.	.	.	.	.	.	.	.	.	890	.	.	.	.	.	.	.	.	.	900	.	.	.	.	.	.	.	.	.	910	.	.	.	.							.	.	.	.	.	920	.	.	.	.	.	.	.	.	.	930	.	.	.	.	.	.	.
		568	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.					.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.
Predicted Secondary structure																										.	.	.	.
Query SS confidence																										.	.	.	.
Query Sequence		G	S	E	A	T	T	G	N	E	V	L	T	V	V	K	T	T	D	G	A	A	S	F	S	.	.	.	.	A	S	S	Q	V	E	L	G	G	Y	L	Y	D	V	R	K	N	G	T	N	W	E	L	Y	A	S
Query Conservation																										.	.	.	.
Alig confidence			.	.																						.	.	.	.
Template Conservation			.	.
Template Sequence		T	.	.	G	E	P	T	K	N	E	L	T	L	F	D	A	S	N	A	T	R	N	N	L	N	V	S	L	V	G	N	T	V	D	L	G	A	W	K	Y	K	L	R	N	V	N	G	R	Y	D	L	Y	N	P
Template Known Secondary structure		S	.	.					S									T	T	S	B		T	T										S	S	G	G	G									T	T
Template Predicted Secondary structure			.	.
Template SS confidence
		938			.	940	.	.	.	.	.	.	.	.	.	950	.	.	.	.	.	.	.	.	.	960	.	.	.	.	.	.	.	.	.	970	.	.	.	.	.	.	.	.	.	980	.	.	.	.	.	.	.	.	.