Job Description P76017 Confidence 9.25% Date Thu Jan 5 12:17:29 GMT 2012 Rank 66 Aligned Residues 216 % Identity 10% Template c3fhhA_ PDB info PDB header:membrane protein Chain: A: PDB Molecule:outer membrane heme receptor shua; PDBTitle: crystal structure of the heme/hemoglobin outer membrane2 transporter shua from shigella dysenteriae Resolution 2.60 Å

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		714	.	.	.	.	.	720	.	.	.	.	.	.	.	.	.	730	.	.	.	.	.	.	.	.	.	740	.	.	.	.																							.	.	.	.	.	750	.	.	.	.	.	.	.	.	.	760	.	.	.	.	.	.	.	.	.	770
Predicted Secondary structure																																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																											.
Query SS confidence																																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																											.
Query Sequence		F	D	M	G	Y	S	G	I	Q	F	G	G	D	K	R	L	S	D	V	M	P	L	Y	V	G	L	Y	I	G	S	T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	H	A	S	P	D	Y	S	G	G	D	G	T	A	R	S	D	Y	M	G	M	Y	A	S	Y	M	A	.
Query Conservation																																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																											.
Alig confidence																																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																											.
Template Conservation
Template Sequence		V	D	A	D	K	W	S	S	R	A	G	M	T	I	N	P	T	N	W	L	M	L	F	G	S	Y	A	Q	A	F	R	A	P	T	M	G	E	M	Y	N	D	S	K	H	F	S	I	G	R	F	Y	T	N	Y	W	V	P	N	P	N	L	R	P	E	T	N	E	T	Q	E	Y	G	F	G	L	R	F	D	D	L
Template Known Secondary structure																	S	S	S	S																							S					S	S	S	S									T	T																			S
Template Predicted Secondary structure
Template SS confidence
		385	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.
					771	.	.	.	.	.	.	.	.	780	.	.	.	.	.	.	.	.	.	790	.	.	.	.	.	.	.	.	.	800	.	.	.	.	.	.	.	.	.	810	.	.	.	.	.	.	.	.	.	820	.	.	.	.	.	.	.	.	.	830	.	.	.	.	.	.	.	.	.	840	.	.	.	.	.	.	.
Predicted Secondary structure		.	.	.
Query SS confidence		.	.	.
Query Sequence		.	.	.	Q	N	G	F	Y	S	D	L	V	I	K	A	S	R	Q	K	N	S	F	H	V	L	D	S	Q	N	N	G	V	N	A	N	G	T	A	N	G	M	S	I	S	L	E	A	G	Q	R	F	N	L	S	P	T	G	Y	G	F	Y	I	E	P	Q	T	Q	L	T	Y	S	H	Q	N	E	M	T	M	K	A
Query Conservation		.	.	.
Alig confidence		.	.	.																																																						.	.	.	.	.																	.	.	.
Template Conservation																																																										.	.	.	.	.																	.	.	.
Template Sequence		M	L	S	N	D	A	L	E	F	K	A	S	Y	F	D	T	K	A	K	D	Y	I	S	T	T	V	D	F	A	A	A	T	T	M	S	Y	N	V	P	N	A	K	I	W	G	W	D	V	M	T	K	Y	T	T	D	L	.	.	.	.	.	F	S	L	D	V	A	Y	N	R	T	R	G	K	D	T	D	.	.	.
Template Known Secondary structure		T	T																										G	G	G	T																								S	S	.	.	.	.	.															T	T	.	.	.
Template Predicted Secondary structure																																																										.	.	.	.	.																	.	.	.
Template SS confidence
		465	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520						.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.
		848	.	850	.	.	.	.	.	.	.	.	.	860	.	.	.	.	.	.	.	.	.	870	.	.	.	.	.	.	.	.	.	880	.	.	.	.	.	.	.	.	.	890	.	.	.	.	.	.	.	.	.	900	.	.	.	.	.	.	.	.	.	910	.	.	.	.	.	.	.	.	.	920	.	.	.	.	.
Predicted Secondary structure																																																																																.	.
Query SS confidence																																																																																.	.
Query Sequence		S	N	G	L	N	I	H	L	N	H	Y	E	S	L	L	G	R	A	S	M	I	L	G	Y	D	I	T	A	G	N	S	Q	L	N	V	Y	V	K	T	G	A	I	R	E	F	S	G	D	T	E	Y	L	L	N	N	S	R	E	K	Y	S	F	K	G	N	G	W	N	N	G	V	G	V	S	A	Q	Y	N	.	.
Query Conservation																																																																																.	.
Alig confidence		.	.	.	.	.	.	.																																														.	.	.	.	.	.	.	.	.	.	.																.	.
Template Conservation		.	.	.	.	.	.	.																																														.	.	.	.	.	.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	T	G	E	Y	I	S	S	I	N	P	D	T	V	T	S	T	L	N	I	P	I	A	H	S	G	F	S	V	G	W	V	G	T	F	A	D	R	S	T	H	I	S	S	K	Q	.	.	.	.	.	.	.	.	.	.	.	P	G	Y	G	V	N	D	F	Y	V	S	Y	Q	G	Q	Q	A
Template Known Secondary structure		.	.	.	.	.	.	.	T			B		S	S															T	T	S	S																					.	.	.	.	.	.	.	.	.	.	.																G	G
Template Predicted Secondary structure		.	.	.	.	.	.	.																																														.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
									537	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.												.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.
			926	.	.	.	930	.	.	.	.	.	.	.	.	.	940	.	.	.	.	.									.	.	.	.	950	.	.	.	.	.
Predicted Secondary structure		.																					.	.	.	.	.	.	.	.
Query SS confidence		.																					.	.	.	.	.	.	.	.
Query Sequence		.	K	Q	H	T	F	Y	L	E	A	D	Y	T	Q	G	N	L	F	D	Q	K	.	.	.	.	.	.	.	.	Q	V	N	G	G	Y	R	F	S	F
Query Conservation		.																					.	.	.	.	.	.	.	.
Alig confidence		.																					.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		L	K	G	M	T	T	T	L	V	L	G	N	A	F	D	K	E	Y	W	S	P	Q	G	I	P	Q	D	G	R	N	G	K	I	F	V	S	Y	Q	W
Template Known Secondary structure		G	T	T									S	T	T					B		T	T	S		B				S
Template Predicted Secondary structure
Template SS confidence
		602	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.	.	.	.	.	.	.	.	.	640

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions