Job Description P76017 Confidence 95.19% Date Thu Jan 5 12:17:29 GMT 2012 Rank 36 Aligned Residues 247 % Identity 15% Template c3bryB_ PDB info PDB header:transport protein Chain: B: PDB Molecule:tbux; PDBTitle: crystal structure of the ralstonia pickettii toluene2 transporter tbux Resolution 3.20 Å

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		702	.	.	.	.	.	.	.	710	.	.	.	.	.	.	.	.	.	720	.	.	.	.	.	.	.	.	.	730	.	.	.	.	.	.	.	.	.	740	.	.	.	.																.	.	.	.	.	750	.	.	.	.	.	.	.	.	.	760	.	.	.	.	.	.
Predicted Secondary structure																																													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		S	L	D	S	F	A	S	G	K	L	S	G	F	D	M	G	Y	S	G	I	Q	F	G	G	D	K	R	L	S	D	V	M	P	L	Y	V	G	L	Y	I	G	S	T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	H	A	S	P	D	Y	S	G	G	D	G	T	A	R	S	D	Y	M	G	M	Y	A
Query Conservation																																													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																													.																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																													.
Template Sequence		K	V	T	T	A	S	S	G	N	H	G	N	N	N	G	P	Y	F	A	P	Q	T	A	F	V	Y	R	.	Q	G	R	Y	A	F	G	A	G	I	F	A	E	G	G	L	G	T	Q	Y	G	G	S	S	F	L	S	R	T	S	N	G	V	D	T	G	L	D	Q	F	S	R	L	L	V	L	R	V	P	F	S	A
Template Known Secondary structure						B			T	T		S	S	S	S														.		T	T																			S	S	S	B	T	T	B		S	S	S				S	S
Template Predicted Secondary structure																													.
Template SS confidence
		58	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.		.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.
		767	.	.	770	.	.	.	.	.	.	.	.	.	780	.	.	.	.	.	.	.	.	.	790	.	.	.	.	.	.	.																											.	.	800	.	.	.	.	.	.	.	.	.	810	.	.	.	.	.	.	.	.	.	820
Predicted Secondary structure																																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		S	Y	M	A	Q	N	G	F	Y	S	D	L	V	I	K	A	S	R	Q	K	N	S	F	H	V	L	D	S	Q	N	N	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	V	N	A	N	G	T	A	N	G	M	S	I	S	L	E	A	G	Q	R	F	N	L
Query Conservation																																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		A	Y	H	V	T	D	K	L	T	V	G	A	S	V	D	A	V	W	T	S	L	N	L	G	T	L	L	D	V	S	Q	I	G	T	L	A	G	Q	G	R	V	S	G	T	L	V	P	T	L	L	G	V	P	G	L	S	G	G	Y	I	D	F	S	G	V	Q	A	W	G	I	G	G	R	L	G	L	T	Y	Q	V
Template Known Secondary structure					S	S	S	S																						S		S	S	S	S	T	T	T	S	S	S				T	T	T	T	T	T	T	S	S	S			S
Template Predicted Secondary structure
Template SS confidence
		143	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.
		821		.	.	.	.	.	.	.	.	830	.	.	.	.	.	.	.	.	.	840	.	.	.	.	.	.	.	.	.	850	.	.	.	.	.	.	.	.	.	860	.	.	.	.	.	.	.	.	.	870	.	.	.	.	.	.	.	.	.	880	.	.	.	.	.	.	.	.	.	890	.	.	.	.	.	.	.	.	.
Predicted Secondary structure			.
Query SS confidence			.
Query Sequence		S	.	P	T	G	Y	G	F	Y	I	E	P	Q	T	Q	L	T	Y	S	H	Q	N	E	M	T	M	K	A	S	N	G	L	N	I	H	L	N	H	Y	E	S	L	L	G	R	A	S	M	I	L	G	Y	D	I	T	A	G	N	S	Q	L	N	V	Y	V	K	T	G	A	I	R	E	F	S	G	D	T	E	Y	L
Query Conservation			.
Alig confidence			.																																																									.												.
Template Conservation																																																												.												.
Template Sequence		T	P	D	T	R	I	G	A	A	Y	Q	A	K	T	H	V	G	D	L	T	G	Q	A	T	L	S	A	V	G	N	I	P	L	K	G	D	V	T	V	R	N	F	Q	M	P	A	Q	L	T	V	G	I	S	H	Q	F	N	D	.	Q	L	S	V	S	A	D	Y	Q	R	V	.	F	W	S	S	V	M	K	D	M
Template Known Secondary structure			T	T											B	B											B																		B												S	S	S	.	S											.		G	G	G			S
Template Predicted Secondary structure																																																												.												.
Template SS confidence
		230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.		.	.	290	.	.	.	.	.	.	.	.		.	300	.	.	.	.	.	.	.
		900	.	.	.	.	.	.	.	.	.	910											.	.	.	.	.	.	.	.	.	920	.	.	.	.	.	.	.	.	.	930	.	.	.	.	.	.	.	.	.	940	.	.	.	.	.	.	.	.	.	950	.	.	.	.	.
Predicted Secondary structure													.	.	.	.	.	.	.	.	.	.
Query SS confidence													.	.	.	.	.	.	.	.	.	.
Query Sequence		L	N	N	S	R	E	K	Y	S	F	K	.	.	.	.	.	.	.	.	.	.	G	N	G	W	N	N	G	V	G	V	S	A	Q	Y	N	K	Q	H	T	F	Y	L	E	A	D	Y	T	Q	G	N	L	F	D	Q	K	Q	V	N	G	G	Y	R	F	S	F
Query Conservation													.	.	.	.	.	.	.	.	.	.
Alig confidence													.	.	.	.	.	.	.	.	.	.																													.	.	.	.
Template Conservation																																																			.	.	.	.
Template Sequence		N	V	G	F	V	Q	S	G	S	A	A	N	L	D	L	S	L	P	Q	N	Y	R	D	I	S	V	F	G	I	G	A	E	Y	R	Y	N	A	K	W	T	F	R	G	G	F	H	Y	A	Q	.	.	.	.	E	T	T	S	L	T	G	G	V	S	Y	A	I
Template Known Secondary structure								S	S	S																												T	T												.	.	.	.													S
Template Predicted Secondary structure																																																			.	.	.	.
Template SS confidence
		312	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360					.	.	.	.	.	.	.	.	.	370	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions