Job Description P76017 Confidence 10.83% Date Thu Jan 5 12:17:29 GMT 2012 Rank 63 Aligned Residues 204 % Identity 10% Template c2odjA_ PDB info PDB header:membrane protein Chain: A: PDB Molecule:porin d; PDBTitle: crystal structure of the outer membrane protein oprd from pseudomonas2 aeruginosa Resolution 2.90 Å

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		720	.	.	.	.	.	.	.	.	.	730	.	.	.	.	.	.	.	.	.	740	.	.	.	.	.	.	.	.	.	750	.	.	.	.	.	.	.	.	.	760	.	.	.	.	.	.	.	.	.	770	.	.	.	.	.	.	.	.	.	780	.	.	.	.	.	.	.	.	.	790	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	I	Q	F	G	G	D	K	R	L	S	D	V	M	P	L	Y	V	G	L	Y	I	G	S	T	H	A	S	P	D	Y	S	G	G	D	G	T	A	R	S	D	Y	M	G	M	Y	A	S	Y	M	A	Q	N	G	F	Y	S	D	L	V	I	K	A	S	R	Q	K	N	S	F	H	V	L	D	S	Q	N	N	G	V
Query Conservation
Alig confidence																												.	.	.	.	.	.	.	.	.	.	.																																	.	.	.	.	.	.	.
Template Conservation																												.	.	.	.	.	.	.	.	.	.	.																																	.	.	.	.	.	.	.
Template Sequence		A	D	F	I	G	G	R	Y	A	I	T	D	N	L	S	A	S	L	Y	G	A	E	L	E	D	I	.	.	.	.	.	.	.	.	.	.	.	Y	R	Q	Y	Y	L	N	S	N	Y	T	I	P	L	A	S	D	Q	S	L	G	F	D	F	N	I	Y	R	T	N	D	E	.	.	.	.	.	.	.	G	K	A	K
Template Known Secondary structure											S	S	S	S											T	T	T	.	.	.	.	.	.	.	.	.	.	.																T	T																.	.	.	.	.	.	.	T	T		S
Template Predicted Secondary structure																												.	.	.	.	.	.	.	.	.	.	.																																	.	.	.	.	.	.	.
Template SS confidence
		184	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.												210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.								.	.	.	.
		800	.	.	.	.	.	.	.	.	.	810	.	.	.	.	.	.	.	.	.	820	.	.	.	.	.	.	.	.	.	830	.	.	.	.	.	.	.	.	.	840	.	.	.	.													.	.	.	.	.	850	.	.	.	.	.	.	.	.	.	860	.	.	.	.	.	.	.
Predicted Secondary structure																																															.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																															.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		N	A	N	G	T	A	N	G	M	S	I	S	L	E	A	G	Q	R	F	N	L	S	P	T	G	Y	G	F	Y	I	E	P	Q	T	Q	L	T	Y	S	H	Q	N	E	M	T	.	.	.	.	.	.	.	.	.	.	.	.	M	K	A	S	N	G	L	N	I	H	L	N	H	Y	E	S	L	L	G	R	A	S	M
Query Conservation																																															.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																						.	.	.	.	.	.	.	.	.	.	.	.														.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																						.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		A	G	D	I	S	N	T	T	W	S	L	A	A	A	Y	T	L	D	A	H	.	.	.	.	.	.	.	.	.	.	.	.	T	F	T	L	A	Y	Q	K	V	H	G	D	Q	P	F	D	Y	I	G	F	G	S	I	F	L	A	N	S	V	Q	Y	S	D	F	N	G	P	G	E	K	S	W	Q	A	R	Y	D	L
Template Known Secondary structure		S																	T	T		.	.	.	.	.	.	.	.	.	.	.	.											S	S	S											S	S	T	T			S	S						T	T
Template Predicted Secondary structure																						.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		246	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.													.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.
		868	.	870	.	.	.	.	.	.	.	.	.	880	.	.	.	.	.	.	.	.	.	890	.	.	.	.	.	.	.	.	.	900	.	.	.	.	.	.	.	.	.	910	.	.	.	.	.	.	.	.	.	920	.	.	.	.	.					.	.	.	.	930	.	.	.	.	.	.	.	.	.	940
Predicted Secondary structure																																																												.	.	.	.																.	.	.
Query SS confidence																																																												.	.	.	.																.	.	.
Query Sequence		I	L	G	Y	D	I	T	A	G	N	S	Q	L	N	V	Y	V	K	T	G	A	I	R	E	F	S	G	D	T	E	Y	L	L	N	N	S	R	E	K	Y	S	F	K	G	N	G	W	N	N	G	V	G	V	S	A	Q	Y	N	.	.	.	.	K	Q	H	T	F	Y	L	E	A	D	Y	T	Q	G	N	.	.	.
Query Conservation																																																												.	.	.	.																.	.	.
Alig confidence					.																																																							.	.	.	.																.	.	.
Template Conservation					.
Template Sequence		N	L	A	.	S	Y	G	V	P	G	L	T	F	X	V	R	Y	I	N	G	K	D	I	D	G	T	K	X	S	D	N	N	V	G	Y	K	N	Y	G	Y	G	E	D	G	K	H	H	E	T	N	L	E	A	K	Y	V	V	Q	S	G	P	A	K	D	L	S	F	R	I	R	Q	A	W	H	R	A	N	A	D	Q
Template Known Secondary structure			T	T	.	S	S	S		T	T																T	T			S	S		T	T	T	S	S	S				S	S																S	S	T	T	T	T														T	T	T
Template Predicted Secondary structure					.
Template SS confidence
		323	.	.		.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.
					941	.	.	.	.	.	.	.	.	950	.	.	.	.
Predicted Secondary structure		.	.	.
Query SS confidence		.	.	.
Query Sequence		.	.	.	L	F	D	Q	K	Q	V	N	G	G	Y	R	F	S
Query Conservation		.	.	.
Alig confidence		.	.	.
Template Conservation
Template Sequence		G	E	G	D	Q	N	E	F	R	L	I	V	D	Y	P	L	S
Template Known Secondary structure		S	S		S	B
Template Predicted Secondary structure
Template SS confidence
		402	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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