Job Description P76017 Confidence 99.03% Date Thu Jan 5 12:17:29 GMT 2012 Rank 16 Aligned Residues 229 % Identity 14% Template c2iwvD_ PDB info PDB header:ion channel Chain: D: PDB Molecule:outer membrane protein g; PDBTitle: structure of the monomeric outer membrane porin ompg in the2 open and closed conformation Resolution 2.3 Å

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		695	.	.	.	.	700	.	.	.	.	.	.	.	.	.	710	.	.	.	.	.	.	.	.	.	720	.	.	.	.	.	.	.	.	.	730	.	.	.	.	.	.	.	.	.	740	.	.	.	.	.	.	.	.	.	750	.	.	.	.	.	.	.	.	.					760	.	.	.	.	.	.	.	.	.	770
Predicted Secondary structure																																																																			.	.	.	.
Query SS confidence																																																																			.	.	.	.
Query Sequence		W	L	R	S	Y	G	G	S	L	D	S	F	A	S	G	K	L	S	G	F	D	M	G	Y	S	G	I	Q	F	G	G	D	K	R	L	S	D	V	M	P	L	Y	V	G	L	Y	I	G	S	T	H	A	S	P	D	Y	S	G	G	D	G	T	A	R	S	.	.	.	.	D	Y	M	G	M	Y	A	S	Y	M	A
Query Conservation																																																																			.	.	.	.
Alig confidence																																																																			.	.	.	.
Template Conservation
Template Sequence		W	R	I	A	L	A	Y	Y	Q	E	G	P	V	D	Y	S	A	G	K	R	G	T	W	F	D	R	P	E	L	E	V	H	Y	Q	F	L	E	N	D	D	F	S	F	G	L	T	G	G	F	R	N	Y	G	Y	H	Y	V	D	E	P	G	K	D	T	A	N	M	Q	R	W	K	I	A	P	D	W	D	V	K	L
Template Known Secondary structure																T	T	T	T				S																	S	S																	S	S		T	T
Template Predicted Secondary structure
Template SS confidence
		43	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.
		771	.	.	.	.	.	.	.	.	780	.	.	.	.	.	.	.	.	.	790	.	.	.	.	.	.	.	.	.	800	.	.	.	.	.	.	.	.	.	810	.	.	.	.	.	.	.	.	.	820	.	.	.	.	.	.	.	.	.	830	.	.	.	.	.	.	.	.	.	840	.	.	.	.	.	.	.	.	.	850
Predicted Secondary structure
Query SS confidence
Query Sequence		Q	N	G	F	Y	S	D	L	V	I	K	A	S	R	Q	K	N	S	F	H	V	L	D	S	Q	N	N	G	V	N	A	N	G	T	A	N	G	M	S	I	S	L	E	A	G	Q	R	F	N	L	S	P	T	G	Y	G	F	Y	I	E	P	Q	T	Q	L	T	Y	S	H	Q	N	E	M	T	M	K	A	S	N	G
Query Conservation
Alig confidence																																	.	.	.	.	.	.	.	.	.	.	.												.	.	.								.	.	.
Template Conservation																																	.	.	.	.	.	.	.	.	.	.	.												.	.	.								.	.	.
Template Sequence		T	D	D	L	R	F	N	G	W	L	S	M	Y	K	F	A	N	D	L	N	T	T	G	Y	A	D	T	R	V	E	T	.	.	.	.	.	.	.	.	.	.	.	E	T	G	L	Q	Y	T	F	N	E	T	.	.	.	V	A	L	R	V	N	Y	.	.	.	Y	L	E	R	G	F	N	M	D	D	S	R	N	N
Template Known Secondary structure		S	S	S														S									S						.	.	.	.	.	.	.	.	.	.	.									S	S	S	.	.	.	B							.	.	.								S	S	T	T			T
Template Predicted Secondary structure																																	.	.	.	.	.	.	.	.	.	.	.												.	.	.								.	.	.
Template SS confidence
		123	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.												.	.	.	.	.	.	160	.	.	.	.				.	.	.	.	.	170	.				.	.	.	.	.	.	.	.	180	.	.	.	.	.
		851	.	.	.	.	.	.	.	.	860	.	.	.	.	.	.	.	.	.	870	.	.	.	.	.	.	.	.	.	880	.	.	.	.	.	.	.	.	.	890	.	.	.	.	.	.	.	.	.	900	.	.	.	.	.	.	.	.	.	910	.	.	.	.	.	.	.	.	.	920	.	.	.	.	.	.	.	.	.	930
Predicted Secondary structure
Query SS confidence
Query Sequence		L	N	I	H	L	N	H	Y	E	S	L	L	G	R	A	S	M	I	L	G	Y	D	I	T	A	G	N	S	Q	L	N	V	Y	V	K	T	G	A	I	R	E	F	S	G	D	T	E	Y	L	L	N	N	S	R	E	K	Y	S	F	K	G	N	G	W	N	N	G	V	G	V	S	A	Q	Y	N	K	Q	H	T	F
Query Conservation
Alig confidence						.	.	.	.	.	.	.	.	.																																													.	.	.	.	.	.
Template Conservation						.	.	.	.	.	.	.	.	.																																													.	.	.	.	.	.
Template Sequence		G	E	F	S	.	.	.	.	.	.	.	.	.	T	Q	E	I	R	A	Y	L	P	L	T	L	G	N	H	S	V	T	P	Y	T	R	I	G	L	D	R	W	S	N	W	D	W	Q	D	D	I	E	R	E	G	H	D	F	.	.	.	.	.	.	N	R	V	G	L	F	Y	G	Y	D	F	Q	N	G	L	S	V
Template Known Secondary structure		T				.	.	.	.	.	.	.	.	.													T	T																	T	T	T	T	T			S							.	.	.	.	.	.												S	S	S
Template Predicted Secondary structure						.	.	.	.	.	.	.	.	.																																													.	.	.	.	.	.
Template SS confidence
		186	.	.	.										190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.							.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250
		931	.	.	.	.	.	.	.						.	940	.	.	.	.	.	.	.	.	.	950	.	.	.	.	.
Predicted Secondary structure										.	.	.	.	.
Query SS confidence										.	.	.	.	.
Query Sequence		Y	L	E	A	D	Y	T	Q	.	.	.	.	.	G	N	L	F	D	Q	K	Q	V	N	G	G	Y	R	F	S	F
Query Conservation										.	.	.	.	.
Alig confidence										.	.	.	.	.
Template Conservation
Template Sequence		S	L	E	Y	A	F	E	W	Q	D	H	D	E	G	D	S	D	K	F	H	Y	A	G	V	G	V	N	Y	S	F
Template Known Secondary structure													S	S	S
Template Predicted Secondary structure
Template SS confidence
		251	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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