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Job DescriptionP13036
Confidence100.00%DateThu Jan 5 11:33:31 GMT 2012
Rank6Aligned Residues631
% Identity16%Templatec3qlbA_
PDB info PDB header:metal transportChain: A: PDB Molecule:enantio-pyochelin receptor; PDBTitle: enantiopyochelin outer membrane tonb-dependent transporter from2 pseudomonas fluorescens bound to the ferri-enantiopyochelin
Resolution3.26 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   107..110.........120.........130.........140.........150.........160.........170.........180......
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Query Sequence  APAPKEDALTVVGDWLGDARENDVFEHAGARDVIRREDFAKTGATTMREVLNRIPGVSAPENNGTGSHDLAMNFGIRGLN
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Template Sequence  SATGPQAGYVAKRSLSGTKTDASLSEIPQSISVITRDQMDAQQVQSVNEALRYTAGVQANTTAASQRFDT. . . LSIRGFD
Template Known Secondary structure 
SSS

SSS


STTTSS
TTT
SSTT

SGGGSTT



SS

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TT
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   25....30.........40.........50.........60.........70.........80.........90.... .....100.
 
   187..190.........200.........210.........220.........230.........240.........250.........260......
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Query Sequence  PRLASRSTVLMDGIPVPFAPYGQPQLSLAPVSLGNMDAIDVVRGGGAVRYGPQSVGGVVNFVTRAIPQDFGIEAGVEGQL
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Template Sequence  VT. . . . TGMLRDGLKGNTAQA. . . . . . WPKVEAYGLERIDVLKGPASVLFGQNSPGGVVNQISKRPLDKPFHEVQIQG. .
Template Known Secondary structure 
G....GGTTB



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GGGS

SS

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   102. ......110........ .120.........130.........140.........150.........160.........
 
   267..270.........280.........290.........300.........310.........320.........330.........340......
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Query Sequence  SPTSSQNNPKETHNLMVGGTADNGFGTALLYSGTRGSDWREHSATRIDDLMLKSKYAPDEVHTFNSLLQYYDGEADMPGG
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Template Sequence  . . . GSFDRAQGQFDFSGPLDDEGQFLYRLVGLERDSGTQFDHIKDDKQYFAPSFTWKPNDDTSLTLLADYTQDTFGAPRV
Template Known Secondary structure  ...TTTSSSSSS
B
SSTT
B

SSSS


SS
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   170.........180.........190.........200.........210.........220.........230.........240......
 
   347..350.........360.........370........ .380.........390.........400......
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Query Sequence  LSRADYDADRWQSTRPYDRFWGRRKLASLGYQ. . . . . . . . . . . . . . . . . . . . FQPDSQHKFNIQGFYTQTLRSGYLEQGK
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Template Conservation                                                                                  
Template Sequence  FLPAQGTLLGNPNGKVRHNVFLDEPGLDNDRTQYSLGYLLEHRLNDVWSLNSSARYGHVNLLTNTASGMSLAPDLRTLNR
Template Known Secondary structure 

BSBTTTB

TT



TT


S
SS


SSS
TTTS
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   247..250.........260.........270.........280.........290.........300.........310.........320......
 
   407..410.........420.........430.........440.........450... ......460.........470......
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Query Sequence  RITLSPRNYWVRGIEPRYSQIFMIGPSAHEVGVGYRYLNESTHEMRY. . . . . . . . . . YTATSSGQLPSGSSPYDRDTRSG
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Template Conservation                                   
                                              
Template Sequence  AAYRFRIVGDTYSLDNNAQARWNLGSTQMVSLLGIDYRRTREDYYLRGGSASPIDIYNPVHHHHGVFDPSTPFTNTVQRA
Template Known Secondary structure 

BSSSSSS







B


S
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   327..330.........340.........350.........360.........370.........380.........390.........400......
 
   477..480.........490.........500.........510.........520.........530.........540.........550......
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Query Sequence  TEAHAWYLDDKIDIGNWTITPGMRFEHIESYQNNAITGTHEEVSYNAPLPALNVLYHLTDSWNLYANTEGSFGTVQYSQI
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Template Conservation                                                                                  
Template Sequence  DQVGVYAQQQFTFDEHWVLTVGGRQDRSSARTDNRMNDSGSKQDDEKFTYRTGLVYLADNGLAPYISYSTSFDPVLGTNF
Template Known Secondary structure  TTTTTTT

TTS


SB
S
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   410.........420.........430.........440.........450.........460.........470.........480.........
 
   557..560.........570.........580.........590.........600.........610.........620.........630......
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Query Sequence  GKAVQSGNVEPEKARTWELGTRYDDGALTAEMGLFLINFNNQYDSNQTNDTVTARGKTRHTGLETQARYDLGTLTPTLDN
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Template Sequence  Y. . . . GTPYKPTSAKQSEVGVKYQPPGIDSYITLSLFDLTQENVLTTDPA. . . QRLNKIQTGEINVRGIELEGKASLARG
Template Known Secondary structure  S....S
B




TTSS
SS...STT

TTS
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   490 .........500.........510.........520.........530..... ....540.........550.........560..
 
   637..640.........650... ......660.........670...... ...680.........690.........700.........
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Query Sequence  VSIYASYAYVNAEIREK. . GDTYGNLVPFSPKHKGTLGVDYK. . . . . PGNWTFNLNSDFQSSQFADNANTVKESADGSTG
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Template Sequence  LDLLAALTYNDAEVSKSNNPLEKGKRPTDTPEKMASLWADYTLPEGPLSGLGFGAGVRYIGSTEADAANTQ. . . . . . . . .
Template Known Secondary structure  SS

TT





TT

S

SSTTTT


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   563......570.........580.........590.........600.........610.........620.........630...
 
   710.........720........ .730.........740.........750.........760.........770....
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Query Sequence  RIPGFMLWGARVAYDFGPQ. . . MADLNLAFGVKNIFDQDYFIRSYDDNNKGIYAGQPRTLYMQGSLKF
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Template Sequence  RVPSYTLLDAAVHYDFDKLIPAAKGLRLAVNATNLTDKHYYEGCSLT. . . NCSAGYDRSVIASLRYRW
Template Known Secondary structure 

GGGSSGGGTTSTT




SS...B




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   634.....640.........650.........660.........670.........680 .........690........
 
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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
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