 |
Job Description | P77808 | Confidence | 38.19% | Date | Thu Jan 5 12:33:01 GMT 2012 |
Rank | 147 | Aligned Residues | 83 |
% Identity | 14% | Template | c3gbtA_ |
PDB info |
PDB header:transferase | Chain: A: PDB Molecule:gluconate kinase; |
PDBTitle: crystal structure of gluconate kinase from lactobacillus acidophilus
|
Resolution | 2.40 Å |
|
 |
  |   |
47 | . | . | 50 | . | . | . | . | . | . | . | . | . | 60 | . | . | . | . | . | . | . | . | . | 70 | . | . | . | . | . | . | . | . | . | 80 | . | . | . | . | . | . | . | . | . | 90 | . | . | |
|
. | . | . | . | . | . | . | 100 | . | . | . | . | . | . | . | . | . | 110 | . | |
. | . | . | . | . | . | . | . | 120 | . | . | . |
Predicted Secondary structure |   |
 |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|  |  |  |  |  |
|
|
|
|
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |
|
|  |  |  |  | . | . |
|  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
| . |
|  |  |  |  |  |  |  |  |
|
|
|
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
. |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
L | D | D | L | V | T | I | L | R | E | R | S | Q | H | A | D | V | L | I | V | N | G | G | L | G | P | T | S | D | D | L | S | A | L | A | A | A | T | A | K | G | E | G | L | V | L | . |
. |
H | E | A | W | L | K | E | M | E | R | Y | F | H | E | R | G | R | V | M | . |
A | P | S | N | R | K | Q | A | E | L | P | A |
Query Conservation |   |
  |   |   |
|   |   |
|
|   |   |   |   |   |   |   |
|   |
|
|   |
|
|
|
|
|
|
|   |
|
|   |
|   |
|
|
|
|   |   |   |
|   |   |
|   |   | . | . |   |   |   |   |   |   |   |
|   |   |   |   |   |   |   |   |   |   |   | . |   |   |   |
|   |
|
|
|   |   |
|   |
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
  |   |   |   |   |   |   |
|   |   |   |   |   |   |   |   |   |
|   |   |   |
| . | . |
|   |
|
|
|   |   |   |   |
|
|   |
|
|
|   |
|   |
|
|   |   |   |   |   |   |
|   |   |
|
|
|
|
|   |
|
|   |   |   |   |
|   |   |   |   |   |   |   |   |   |   |   |   |   |   |
Template Sequence |   |
L | Y | D | A | A | S | N | L | I | K | N | T | K | K | P | V | A | I | N | A | T | G | . |
. |
G | F | L | K | S | D | F | V | R | Q | L | C | A | N | I | F | N | V | P | I | V | T | X | K | E | Q | Q | S | G | T | L | A | A | X | F | L | A | R | Q | A | L | G | L | N | Q | D | L | S | E | I | G | Q | F | A | Q | A |
Template Known Secondary structure |   |
 |  |  |  |  |  |  |  |  | T | T | S |
|
|
| S |  |  |  |  |  | S | . | . | G | G | G |
| S |  |  |  |  |  |  |  |  |  |  |  | T | S |
|  |  |  |  | S |
| S |
|  |  |  |  |  |  |  |  |  |  |  |  |  | T | T | S |
|
| S | G | G | G | G | G | G | T | S |
|  |
Template Predicted Secondary structure |   |
 |  |  |  |  |  |  |  |  |  |
|
|
|
|
|  |  |  |  |  |  |
| . | . |
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |
|
|  |  |  |  |  |
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|
|  |  |  |  |  |  |  |
|
|
|
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
378 | . | 380 | . | . | . | . | . | . | . | . | . | 390 | . | . | . | . | . | . | . | . | . | |
|
400 | . | . | . | . | . | . | . | . | . | 410 | . | . | . | . | . | . | . | . | . | 420 | . | . | . | . | . | . | . | . | . | 430 | . | . | . | . | . | . | . | . | . | 440 | . | . | . | . | . | . | . | . | . | 450 | . | . | . | . | . |
  |
  |   |
124 | . | . | . | . | . | 130 | . |
Predicted Secondary structure |   |
|
|  |  |  |  |
|
|
Query SS confidence |   |
|
|
|
|
|
|
|
|
Query Sequence |   |
S | A | E | F | I | N | N | P |
Query Conservation |   |
|
|   |   |
|   |
|   |
Alig confidence |   |
|
|
|
|
|
|
|
|
Template Conservation |   |
  |   |   |   |   |
|   |   |
Template Sequence |   |
D | K | V | Y | F | P | N | P |
Template Known Secondary structure |   |
 |  |  |  |
|
|
|  |
Template Predicted Secondary structure |   |
|
|  |  |  |  |
|  |
Template SS confidence |   |
|
|
|
|
|
|
|
|
  |   |
456 | . | . | . | 460 | . | . | . |
  |
No model constructed - rank, confidence too low
Phyre is for academic use only
Please cite: Protein structure prediction on
the web: a case study using the Phyre server |
Kelley LA and Sternberg MJE. Nature Protocols
4, 363 - 371 (2009) [pdf] [Import into BibTeX] |
  |
|
|