Job Description P27836 Confidence 20.62% Date Thu Jan 5 11:44:13 GMT 2012 Rank 239 Aligned Residues 78 % Identity 12% Template c3dzdA_ PDB info PDB header:transcription regulator Chain: A: PDB Molecule:transcriptional regulator (ntrc family); PDBTitle: crystal structure of sigma54 activator ntrc4 in the inactive2 state Resolution 2.40 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		109	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.			.	.	.	.	.	180	.	.	.	.	.	.
Predicted Secondary structure																																																																				.	.
Query SS confidence																																																																				.	.
Query Sequence		T	P	V	F	L	V	G	G	K	P	E	V	L	A	Q	T	E	A	K	L	R	N	Q	W	N	V	N	I	V	G	S	Q	D	G	Y	F	K	P	E	Q	R	Q	A	L	F	E	R	I	H	A	S	G	A	Q	I	V	T	V	A	M	G	S	P	K	Q	E	.	.	I	I	M	R	D	C	R	L	V	H	P	D
Query Conservation																																																																				.	.
Alig confidence																						.														.	.	.	.	.	.	.																										.	.
Template Conservation																						.														.	.	.	.	.	.	.
Template Sequence		K	R	V	L	V	V	D	D	E	E	S	I	T	S	S	L	S	A	I	L	.	E	E	E	G	Y	H	P	D	T	A	K	T	L	.	.	.	.	.	.	.	R	E	A	E	K	K	I	K	E	L	F	F	P	V	I	V	L	D	V	W	X	P	D	G	D	G	V	N	F	I	D	F	I	K	E	N	S	P	D
Template Known Secondary structure									S													.			T	T							S	S		.	.	.	.	.	.	.										S			S						S			T	T			T	T	T										T	T
Template Predicted Secondary structure																						.														.	.	.	.	.	.	.
Template SS confidence
		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.		.	.	.	.	.	.	.	.	30	.	.	.	.								.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.
		187	.	.	190	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	L	Y	M	G	V	G	G
Query Conservation
Alig confidence
Template Conservation
Template Sequence		S	V	V	I	V	I	T	G
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		74	.	.	.	.	.	80	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions