 |
Job Description | P27836 | Confidence | 23.30% | Date | Thu Jan 5 11:44:13 GMT 2012 |
Rank | 207 | Aligned Residues | 101 |
% Identity | 10% | Template | c1vmeB_ |
PDB info |
PDB header:electron transport | Chain: B: PDB Molecule:flavoprotein; |
PDBTitle: crystal structure of flavoprotein (tm0755) from thermotoga maritima at2 1.80 a resolution
|
Resolution | 1.80 Å |
|
 |
  |   |
115 | . | . | . | . | 120 | . | . | . | . | . | . | . | . | . | 130 | . | . | . | . | . | . | . | . | . | 140 | . | . | . | . | . | . | . | . | . | 150 | . | . | . | . | . | . | . | . | . | 160 | . | . | . | . | . | . | . | . | |
|
|
. | |
|
|
170 | . | . | . | . | . | . | . | . | . | 180 | . | . | . | . | . | . | . | . |
Predicted Secondary structure |   |
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|  |  |  |  |  |
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |
| . | . | . |
| . | . | . |
|
|  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|  |
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
. |
. |
| . |
. |
. |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
G | G | K | P | E | V | L | A | Q | T | E | A | K | L | R | N | Q | W | N | V | N | I | V | G | S | Q | D | G | Y | F | K | P | E | Q | R | Q | A | L | F | E | R | I | H | A | S | G | A | Q | I | V | T | V | A | M | . |
. |
. |
G | . |
. |
. |
S | P | K | Q | E | I | I | M | R | D | C | R | L | V | H | P | D | A | L |
Query Conservation |   |
|   |   |   |   |
|   |   |   |   |   |   |   |
|   |   |   |   |   |   |   |
|
|
|   |   |   |
|
|   |   |   |   |
|   |   |   |
|
|   |   |
|   |   |   |   |
|
|
|
|   |
|
|
| . | . | . |
| . | . | . |   |
|
|
|
|   |   |   |   |   |   |   |   |   |
|   |   |   |
|
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . |
|
|
|
|
|
|
|
|
| . | . | . |
| . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
|
|
|   |   |   |
|   |   |
|
|   |   |
|   |   | . |   |
|   |   |
|   |   |   |   |   |   |
|   |   |   |   |   |   |   |   |   |   |   |   |   |   | . | . |   |   |
|   |
|
|   |
|
|
|
|   |   |   |   |   |   |
|   |   |   |   |   |   |   |   |
|   |   |   |   |   |   |   |
|
Template Sequence |   |
G | F | V | E | N | V | X | K | K | A | I | D | S | L | K | E | . |
K | G | F | T | P | V | V | Y | K | F | S | D | E | E | R | P | A | I | S | E | I | L | K | D | I | P | . |
. |
D | S | E | A | L | I | F | G | V | S | T | Y | E | A | E | I | H | P | L | X | R | F | T | L | L | E | I | I | D | K | A | N | Y | E | K |
Template Known Secondary structure |   |
S |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . | T | T |
|  |  |  |  |  |  |  |
| S | S |
|
|
|
|  |  |  |  |  |  |  | S | T | . | . | T |
| S |  |  |  |  |  |  |
|  |  | T | T |  |  |
|  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|
Template Predicted Secondary structure |   |
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  | . |
|
|
|  |  |  |  |  |  |
|
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  | . | . |  |
|
|  |  |  |  |  |  |
|
|
|
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|
|
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
265 | . | . | . | . | 270 | . | . | . | . | . | . | . | . | . | 280 | |
. | . | . | . | . | . | . | . | . | 290 | . | . | . | . | . | . | . | . | . | 300 | . | . | . | . | . | . | |
|
. | . | . | 310 | . | . | . | . | . | . | . | . | . | 320 | . | . | . | . | . | . | . | . | . | 330 | . | . | . | . | . | . | . | . | . | 340 | . |
  |
  |   |
189 | 190 | . | . | . | . | . | . | . | . | . | 200 | . | . | . | . | . | . | . | . | . | 210 | . | . | . | . | . | . | . | . |
Predicted Secondary structure |   |
 |  |  |  |
|  |  |  |  |  |  |
|
|
|
|
|
|
|
|  |  |  |  |  |
|
|
|  |  |  |
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
Y | M | G | V | G | G | T | Y | D | V | F | T | G | H | V | K | R | A | P | K | I | W | Q | T | L | G | L | E | W | L |
Query Conservation |   |
  |
|   |
|
|
|
|
|
|   |   |
|
|   |   |   |
|
|
|   |
|   |   |   |   |
|
|
|
|
|
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
  |   |   |   |
|
|
|
|
|   |   |
|   |
|   |   |   |   |   |   |   |
|   |   |   |
|   |   |   |
|
Template Sequence |   |
P | V | L | V | F | G | V | H | G | W | A | P | S | A | E | R | T | A | G | E | L | L | K | E | T | K | F | R | I | L |
Template Known Secondary structure |   |
 |  |  |  |  |  |  |
|
|
|
|
| T | T | S |
|
|  |  |  |  |  |  | T | S | S |
|  |  |  |
Template Predicted Secondary structure |   |
 |  |  |  |  |  |
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|  |  |  |
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
342 | . | . | . | . | . | . | . | 350 | . | . | . | . | . | . | . | . | . | 360 | . | . | . | . | . | . | . | . | . | 370 | . |
  |
No model constructed - rank, confidence too low
Phyre is for academic use only
Please cite: Protein structure prediction on
the web: a case study using the Phyre server |
Kelley LA and Sternberg MJE. Nature Protocols
4, 363 - 371 (2009) [pdf] [Import into BibTeX] |
  |
|
|