Job Description P62517 Confidence 99.52% Date Thu Jan 5 12:07:33 GMT 2012 Rank 7 Aligned Residues 235 % Identity 14% Template d1xhba2 SCOP info Nucleotide-diphospho-sugar transferases Nucleotide-diphospho-sugar transferases Polypeptide N-acetylgalactosaminyltransferase 1, N-terminal domain Resolution 2.50

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		242	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.			.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																							.	.
Query SS confidence																																							.	.
Query Sequence		H	R	T	A	L	I	M	P	I	C	N	E	D	V	N	R	V	F	A	G	L	R	A	T	W	E	S	V	K	A	T	G	N	A	K	H	F	.	.	D	V	Y	I	L	S	D	S	Y	N	P	D	I	C	V	A	E	Q	K	A	W	M	E	L	I	A	E	V	G	G	E	G	Q	I	F	Y	R	R	R	R	R
Query Conservation																																							.	.
Alig confidence																		.	.	.	.														.				.	.																				.	.	.	.	.	.
Template Conservation																		.	.	.	.														.																									.	.	.	.	.	.
Template Sequence		P	T	T	S	V	V	I	V	F	H	N	E	A	W	S	T	.	.	.	.	L	L	R	T	V	H	S	V	I	N	R	S	P	.	R	H	M	I	E	E	I	V	L	V	D	D	A	S	E	R	D	F	L	K	R	P	L	E	.	.	.	.	.	.	S	Y	V	K	K	L	K	V	P	V	H	V	I	R	M	E
Template Known Secondary structure											S	S						.	.	.	.											S	S		.	G	G	G										S				G	G	G	T					.	.	.	.	.	.					S	S	S	S								S
Template Predicted Secondary structure																		.	.	.	.														.																									.	.	.	.	.	.
Template SS confidence
		116	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.					.	.	.	.	.	.	.	.	140	.	.	.	.		.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.							.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.
		320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.
Predicted Secondary structure																																																																														.	.	.	.
Query SS confidence																																																																														.	.	.	.
Query Sequence		R	V	K	R	K	S	G	N	I	D	D	F	C	R	R	W	G	S	Q	Y	S	Y	M	V	V	L	D	A	D	S	V	M	T	G	D	C	L	C	G	L	V	R	L	M	E	A	N	P	N	A	G	I	I	Q	S	S	P	K	A	S	G	M	D	T	L	Y	A	R	C	Q	Q	F	A	T	R	V	.	.	.	.
Query Conservation																																																																														.	.	.	.
Alig confidence																	.	.																																																												.	.	.	.
Template Conservation																	.	.
Template Sequence		Q	R	S	G	L	I	R	A	R	L	K	G	A	A	V	.	.	S	R	G	Q	V	I	T	F	L	D	A	H	C	E	C	T	A	G	W	L	E	P	L	L	A	R	I	K	H	D	R	R	T	V	V	C	P	I	I	D	V	I	S	D	D	T	F	E	Y	M	A	G	S	D	M	T	Y	G	G	F	N	W	K
Template Known Secondary structure		S															.	.			S	S							S	S					T	T													T	T												S	S	S								T	T							T	T
Template Predicted Secondary structure																	.	.
Template SS confidence
		185	.	.	.	.	190	.	.	.	.	.	.	.	.	.			200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.
												396	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.				.	.	450	.	.	.	.	.	.	.	.	.	460	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.																																																					.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.																																																					.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	Y	G	P	L	F	T	A	G	L	H	F	W	Q	L	G	E	S	H	Y	W	G	H	N	A	I	I	R	V	K	P	F	I	E	H	C	A	L	A	P	L	P	G	E	G	S	F	A	G	S	I	L	S	.	.	.	H	D	F	V	E	A	A	L	M	R	R	A	G	W	G
Query Conservation		.	.	.	.	.	.	.	.	.	.																																																					.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.																																		.	.	.	.	.	.	.	.	.											.	.	.
Template Conservation																																													.	.	.	.	.	.	.	.	.
Template Sequence		L	N	F	R	W	Y	P	V	P	Q	R	E	M	D	R	R	K	G	D	R	T	L	P	V	R	T	P	T	M	A	G	G	L	F	S	I	D	R	D	Y	F	Q	E	.	.	.	.	.	.	.	.	.	I	G	T	Y	D	A	G	M	D	I	W	G	G	E	N	L	E	I	S	F	R	I	W	Q	C	G	G	T
Template Known Secondary structure																	T	T	T		T	T	S					S	B			S	S	S											.	.	.	.	.	.	.	.	.	T	T	S			T	T	S		T	T					S									T	T
Template Predicted Secondary structure																																													.	.	.	.	.	.	.	.	.
Template SS confidence
		263	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.										.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.
		463	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	W	I	A	Y	D	L	P	G	S	Y	E	E	L	P	P	N	L	L	D	E	L	K	R	D	R	R	W	C	H	G	N	L	M	N	F
Query Conservation
Alig confidence
Template Conservation
Template Sequence		L	E	I	V	T	C	S	H	V	G	H	V	F	G	Q	I	I	N	K	N	N	R	R	L	A	E	V	W	M	D	E	F	K	N	F	F
Template Known Secondary structure																															G	G	G	G
Template Predicted Secondary structure
Template SS confidence
		334	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions