 |
Job Description | P62517 | Confidence | 9.66% | Date | Thu Jan 5 12:07:33 GMT 2012 |
Rank | 83 | Aligned Residues | 94 |
% Identity | 18% | Template | c3tqdA_ |
PDB info |
PDB header:transferase | Chain: A: PDB Molecule:3-deoxy-manno-octulosonate cytidylyltransferase; |
PDBTitle: structure of the 3-deoxy-d-manno-octulosonate cytidylyltransferase2 (kdsb) from coxiella burnetii
|
Resolution | 1.80 Å |
|
 |
  |   |
262 | . | . | . | . | . | . | . | 270 | . | . | . | . | . | . | . | . | . | 280 | . | . | . | . | . | . | . | . | . | 290 | . | . | . | . | . | . | . | . | . | 300 | . | . | . | . | . | . | . | . | . | 310 | . | . | . | . | . | . | . | . | . | 320 | . | . | . | . | . | . | . | . | . | 330 | . | . | . | . | . | . | |
. | . | . | 340 |
Predicted Secondary structure |   |
 |  |  |  |  |  |  |  |  |  |
|
|
|
|
|
|  |  |  |  |  |  |
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|
|  |  |  |  |  |  |
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |
|
| . |
|
|
|
|
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
Query Sequence |   |
L | R | A | T | W | E | S | V | K | A | T | G | N | A | K | H | F | D | V | Y | I | L | S | D | S | Y | N | P | D | I | C | V | A | E | Q | K | A | W | M | E | L | I | A | E | V | G | G | E | G | Q | I | F | Y | R | R | R | R | R | R | V | K | R | K | S | G | N | I | D | D | F | C | R | R | W | G | . |
S | Q | Y | S |
Query Conservation |   |
|   |
|   |   |   |
|
|   |   |   |
|   |   |   |   |
|   |   |
|
|
|
|
|
|   |
|   |
|   |   |   |   |
|
|   |
|   |   |   |
|   |   |   |   |   |   |   |   |   |
|   |
|
|
|
|   |   |
|   |   |
|
|
|
|
|
|   |
|
|   |   |
|   |
| . |   |   |
|
|
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . |
|
|
|
|
|
|
|
| . | . |
|
|
|
| . | . | . | . | . | . | . | . |
|
|
|
|
|
|
| . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
Template Conservation |   |
|   |   |   |
|   |   |
|   |   |   |
|
|   | . | . | . |   |
|
|
|
|   |   |   | . | . |   |   |
|   | . | . | . | . | . | . | . | . |   |   |   |   |   |   |   | . | . | . | . |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |
Template Sequence |   |
I | Q | H | V | Y | E | S | A | I | K | S | G | A | E | . |
. |
. |
E | V | V | I | A | T | D | D | . |
. |
K | R | I | R | . |
. |
. |
. |
. |
. |
. |
. |
Q | V | A | E | D | F | G | . |
. |
. |
. |
A | V | V | C | X | T | S | S | D | H | Q | S | G | T | E | R | I | A | E | A | A | V | A | L | G | F | E | D | D | E |
Template Known Secondary structure |   |
 |  |  |  |  |  |  |  |  |  | T | T |
| S | . | . | . |  |  |  |  |  |  | S |
| . | . |  |  |  |  | . | . | . | . | . | . | . | . |  |  |  |  |  | T | T | . | . | . | . |
|  |  |  |  |
|
| T | T |
|
| S |  |  |  |  |  |  |  |  |  |  |  | T | T |
|
| T | T |
|
Template Predicted Secondary structure |   |
 |  |  |  |  |  |  |  |  |  |
|
|
|
| . | . | . |  |  |  |  |  |
|
|  | . | . |  |  |  |  | . | . | . | . | . | . | . | . |  |  |  |  |  |
|
| . | . | . | . |
|
|  |  |  |
|
|
|
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |
|
|
|
|
|
|
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
30 | . | . | . | . | . | . | . | . | . | 40 | . | . | . | |
|
|
. | . | . | . | . | . | 50 | . | |
|
. | . | . | . | |
|
|
|
|
|
|
|
. | . | . | . | 60 | . | . | |
|
|
|
. | . | . | . | . | . | . | 70 | . | . | . | . | . | . | . | . | . | 80 | . | . | . | . | . | . | . | . | . | 90 | . | . |
  |
  |   |
341 | . | . | . | . | . | . | . | . | 350 | . | |
. | . | . | . | . | . | . | . | 360 | . | . | . | . | . | . | . | . | . | 370 | . | . |
Predicted Secondary structure |   |
 |  |  |  |  |  |
|
|
|
|
| . |
|  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|  |  |  |  |
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
Y | M | V | V | L | D | A | D | S | V | M | . |
T | G | D | C | L | C | G | L | V | R | L | M | E | A | N | P | N | A | G | I | I |
Query Conservation |   |
|
|
|
|
|
|
|
|
|
|
| . |   |   |
|   |
|   |   |
|
|   |   |
|
|
|
|
|   |
|
|
|
|
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
  |   |
|
|   |   |   |
|   |
|   |   |   |   |   |   |
|   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |
Template Sequence |   |
I | I | V | C | L | Q | G | D | E | P | L | I | P | P | D | A | I | R | K | L | A | E | D | L | D | E | H | D | K | V | A | S | L |
Template Known Secondary structure |   |
 |  |  |  |  |
| T | T |
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|  |  |  |  |
Template Predicted Secondary structure |   |
 |  |  |  |  |  |
|
|  |  |  |  |
|  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
93 | . | . | . | . | . | . | 100 | . | . | . | . | . | . | . | . | . | 110 | . | . | . | . | . | . | . | . | . | 120 | . | . | . | . | . |
  |
No model constructed - rank, confidence too low
Phyre is for academic use only
Please cite: Protein structure prediction on
the web: a case study using the Phyre server |
Kelley LA and Sternberg MJE. Nature Protocols
4, 363 - 371 (2009) [pdf] [Import into BibTeX] |
  |
|
|