 |
Job Description | P62517 | Confidence | 9.00% | Date | Thu Jan 5 12:07:33 GMT 2012 |
Rank | 95 | Aligned Residues | 101 |
% Identity | 5% | Template | c2qh5B_ |
PDB info |
PDB header:isomerase | Chain: B: PDB Molecule:mannose-6-phosphate isomerase; |
PDBTitle: crystal structure of mannose-6-phosphate isomerase from helicobacter2 pylori
|
Resolution | 2.30 Å |
|
 |
  |   |
247 | . | . | 250 | . | . | . | . | . | . | . | . | . | 260 | . | . | . | . | . | . | . | . | . | 270 | . | . | . | . | . | . | . | . | . | 280 | . | . | . | . | . | . | . | . | . | 290 | . | . | . | . | . | . | . | . | . | 300 | . | . | . | . | . | . | . | . | . | 310 | . | . | . | . | . | . | . | . | . | 320 | . | . | . | . | . | . |
Predicted Secondary structure |   |
 |  |  |
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|
|  |  |  |  |  |  |
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|
|  |  |  |  |  |  |
|
|
|
|
|
|
|  |  |
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
I | M | P | I | C | N | E | D | V | N | R | V | F | A | G | L | R | A | T | W | E | S | V | K | A | T | G | N | A | K | H | F | D | V | Y | I | L | S | D | S | Y | N | P | D | I | C | V | A | E | Q | K | A | W | M | E | L | I | A | E | V | G | G | E | G | Q | I | F | Y | R | R | R | R | R | R | V | K | R | K | S | G |
Query Conservation |   |
|
|
|
|
|
|
|
|   |   |   |
|   |
|   |
|   |
|   |   |   |
|
|   |   |   |
|   |   |   |   |
|   |   |
|
|
|
|
|
|   |
|   |
|   |   |   |   |
|
|   |
|   |   |   |
|   |   |   |   |   |   |   |   |   |
|   |
|
|
|
|   |   |
|   |   |
|
|
|
|
Alig confidence |   |
|
|
|
|
|
|
|
|
|
| . | . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . | . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
Template Conservation |   |
|
|   |
|   |
|   |   |
|
| . | . | . | . | . |
|   |   |   |
|   |   |   |   |   |   |
|   |   | . | . | . |   |
|
|
|   |   |   |   |   |   |   |   |
|   | . | . | . | . | . | . | . | . |   |   |   |   |   |   |   |   |   |   |   |
|   |   |   |   |
|   |   |   |   |
| . |
|   |   |
Template Sequence |   |
F | L | K | L | F | D | H | K | S | L | . |
. |
. |
. |
. |
F | E | L | S | F | K | R | N | A | S | L | V | D | E | . |
. |
. |
T | L | I | V | C | N | E | K | H | Y | F | L | A | L | . |
. |
. |
. |
. |
. |
. |
. |
E | E | I | K | N | E | I | K | N | K | S | V | G | F | L | L | E | S | L | S | K | N | . |
T | A | N |
Template Known Secondary structure |   |
G |
|
|
| S | S | S |
|
|  | . | . | . | . | . |  |  |  |  |  |  |  |  |  | T | T |
| S |  | . | . | . |  |  |  |  |  |  | G | G | G |  |  |  |  |  | . | . | . | . | . | . | . | . |  |  | T | T | T | T |
| S | S |
|  |  |  |  |  |  |  | S | S |
|
|
| . |  |  |  |
Template Predicted Secondary structure |   |
|
|
|
|
|
|
|
|
|  | . | . | . | . | . |  |  |  |  |  |  |  |  |  |  |
|
|
|
| . | . | . |  |  |  |  |  |  |
|  |  |  |  |  |  |  | . | . | . | . | . | . | . | . |  |  |  |  |  |
|
|
|
|
|
|  |  |  |  |  |
|
|
|
|
|
| . |
|  |  |
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
28 | . | 30 | . | . | . | . | . | . | . | |
|
|
|
|
. | . | 40 | . | . | . | . | . | . | . | . | . | 50 | . | |
|
|
. | . | . | . | . | . | . | . | 60 | . | . | . | . | . | |
|
|
|
|
|
|
|
. | . | . | . | 70 | . | . | . | . | . | . | . | . | . | 80 | . | . | . | . | . | . | . | |
. | . | 90 |
  |
  |   |
327 | . | . | 330 | . | . | . | . | . | . | . | . | . | 340 | . | . | . | . | . | . | . | . | . | 350 | |
. | . | . | . | . | . | . | . | . | 360 | . | . | . | . | . |
Predicted Secondary structure |   |
 |  |  |  |  |  |  |  |
|
|
|
|
|
|  |  |  |  |  |  |
|
|
|
| . |
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
N | I | D | D | F | C | R | R | W | G | S | Q | Y | S | Y | M | V | V | L | D | A | D | S | V | . |
M | T | G | D | C | L | C | G | L | V | R | L | M | E | A |
Query Conservation |   |
|
|   |
|
|   |   |
|   |
|   |   |
|
|
|
|
|
|
|
|
|
|
|
| . |
|   |   |
|   |
|   |   |
|
|   |   |
|
|
|
Alig confidence |   |
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
|
|   |   |
|   |   |   | . |   |   |   |   |   |   |   |
|
|   |   |   |
|   |   |   |   |   |   |   |   |   |   |   |   |
|   |   |   |   |   |
Template Sequence |   |
A | I | A | L | S | A | L | M | . |
S | D | K | E | D | L | L | I | V | T | P | S | D | H | L | I | K | D | L | Q | A | Y | E | N | A | I | K | K | A | I | D |
Template Known Secondary structure |   |
 |  |  |  |  |  |  | T | . | S |
| T | T | S |  |  |  |  |  |  | S | S |
| B |
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |
Template Predicted Secondary structure |   |
 |  |  |  |  |  |  |  | . |
|
|
|
|
|  |  |  |  |  |  |
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
91 | . | . | . | . | . | . | . | |
. | 100 | . | . | . | . | . | . | . | . | . | 110 | . | . | . | . | . | . | . | . | . | 120 | . | . | . | . | . | . | . | . | . |
  |
No model constructed - rank, confidence too low
Phyre is for academic use only
Please cite: Protein structure prediction on
the web: a case study using the Phyre server |
Kelley LA and Sternberg MJE. Nature Protocols
4, 363 - 371 (2009) [pdf] [Import into BibTeX] |
  |
|
|