Job Description P62517 Confidence 99.60% Date Thu Jan 5 12:07:33 GMT 2012 Rank 4 Aligned Residues 199 % Identity 16% Template c2ffuA_ PDB info PDB header:transferase Chain: A: PDB Molecule:polypeptide n-acetylgalactosaminyltransferase 2; PDBTitle: crystal structure of human ppgalnact-2 complexed with udp2 and ea2 Resolution 1.64 Å

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		242	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.		.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320
Predicted Secondary structure																																							.
Query SS confidence																																							.
Query Sequence		H	R	T	A	L	I	M	P	I	C	N	E	D	V	N	R	V	F	A	G	L	R	A	T	W	E	S	V	K	A	T	G	N	A	K	H	F	.	D	V	Y	I	L	S	D	S	Y	N	P	D	I	C	V	A	E	Q	K	A	W	M	E	L	I	A	E	V	G	G	E	G	Q	I	F	Y	R	R	R	R	R	R
Query Conservation																																							.
Alig confidence																		.	.	.	.																		.														.	.	.	.	.	.	.	.	.	.
Template Conservation																		.	.	.	.																																.	.	.	.	.	.	.	.	.	.
Template Sequence		P	A	T	S	V	V	I	T	F	H	N	E	A	R	S	A	.	.	.	.	L	L	R	T	V	V	S	V	L	K	K	S	P	P	H	L	I	K	E	I	I	L	V	D	D	Y	S	N	D	P	E	.	.	.	.	.	.	.	.	.	.	D	G	A	L	L	G	K	I	E	K	V	R	V	L	R	N	D	R	R
Template Known Secondary structure											S	S						.	.	.	.												S		G	G	G										S		S		T		.	.	.	.	.	.	.	.	.	.				G	G	G	G	B	T	T							S	S
Template Predicted Secondary structure																		.	.	.	.																																.	.	.	.	.	.	.	.	.	.
Template SS confidence
		136	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.					.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.											.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.
		321	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.
Predicted Secondary structure																																																																													.	.	.	.	.
Query SS confidence																																																																													.	.	.	.	.
Query Sequence		V	K	R	K	S	G	N	I	D	D	F	C	R	R	W	G	S	Q	Y	S	Y	M	V	V	L	D	A	D	S	V	M	T	G	D	C	L	C	G	L	V	R	L	M	E	A	N	P	N	A	G	I	I	Q	S	S	P	K	A	S	G	M	D	T	L	Y	A	R	C	Q	Q	F	A	T	R	V	.	.	.	.	.
Query Conservation																																																																													.	.	.	.	.
Alig confidence				.												.	.																																		.																										.	.	.	.	.
Template Conservation				.												.	.																																		.
Template Sequence		E	G	.	L	M	R	S	R	V	R	G	A	D	A	.	.	A	Q	A	K	V	L	T	F	L	D	S	H	C	E	C	N	E	H	W	L	E	P	L	L	E	R	V	A	E	D	R	T	R	.	V	V	S	P	I	I	D	V	I	N	M	D	N	F	Q	Y	V	G	A	S	A	D	L	K	G	G	F	D	W	N
Template Known Secondary structure				.												.	.			S	S							S	S					T	T													T	T		.											T	T	T								S	S							T	T
Template Predicted Secondary structure				.												.	.																																		.
Template SS confidence
		202	.		.	.	.	.	.	.	210	.	.	.	.			.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.		.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.
						396	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.							.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.				.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.
Predicted Secondary structure		.	.	.	.																		.	.	.	.	.	.																																			.	.	.
Query SS confidence		.	.	.	.																		.	.	.	.	.	.																																			.	.	.
Query Sequence		.	.	.	.	Y	G	P	L	F	T	A	G	L	H	F	W	Q	L	G	E	S	.	.	.	.	.	.	H	Y	W	G	H	N	A	I	I	R	V	K	P	F	I	E	H	C	A	L	A	P	L	P	G	E	G	S	F	A	G	S	I	L	.	.	.	S	H	D	F	V	E	A	A	L	M	R	R	A	G	W	G
Query Conservation		.	.	.	.																		.	.	.	.	.	.																																			.	.	.
Alig confidence		.	.	.	.																		.	.	.	.	.	.																	.	.	.	.	.	.	.	.	.										.	.	.
Template Conservation																																													.	.	.	.	.	.	.	.	.
Template Sequence		L	V	F	K	W	D	Y	M	T	P	E	Q	R	R	S	R	Q	G	N	P	V	A	P	I	K	T	P	M	I	A	G	G	L	F	V	M	D	K	F	Y	F	E	E	.	.	.	.	.	.	.	.	.	L	G	K	Y	D	M	M	M	D	V	W	G	G	E	N	L	E	I	S	F	R	V	W	Q	C	G	G	S
Template Known Secondary structure																	T	S	S		T	T	S					S	S			S	S	S											.	.	.	.	.	.	.	.	.	T	T				T	T			S	S	S	S												T	T
Template Predicted Secondary structure																																													.	.	.	.	.	.	.	.	.
Template SS confidence
		278	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320										.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.
		463	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	W	I	A	Y
Query Conservation
Alig confidence
Template Conservation
Template Sequence		L	E	I	I	P
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		349	350	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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