Job Description P62517 Confidence 99.63% Date Thu Jan 5 12:07:33 GMT 2012 Rank 3 Aligned Residues 209 % Identity 13% Template c1xhbA_ PDB info PDB header:transferase Chain: A: PDB Molecule:polypeptide n-acetylgalactosaminyltransferase 1; PDBTitle: the crystal structure of udp-galnac: polypeptide alpha-n-2 acetylgalactosaminyltransferase-t1 Resolution 2.50 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		238	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.		.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.
Predicted Secondary structure																																											.
Query SS confidence																																											.
Query Sequence		L	N	P	E	H	R	T	A	L	I	M	P	I	C	N	E	D	V	N	R	V	F	A	G	L	R	A	T	W	E	S	V	K	A	T	G	N	A	K	H	F	.	D	V	Y	I	L	S	D	S	Y	N	P	D	I	C	V	A	E	Q	K	A	W	M	E	L	I	A	E	V	G	G	E	G	Q	I	F	Y	R	R
Query Conservation																																											.
Alig confidence																						.	.	.	.																		.																				.	.	.								.	.
Template Conservation																						.	.	.	.																																						.	.	.								.	.
Template Sequence		P	D	N	L	P	T	T	S	V	V	I	V	F	H	N	E	A	W	S	T	.	.	.	.	L	L	R	T	V	H	S	V	I	N	R	S	P	R	H	M	I	E	E	I	V	L	V	D	D	A	S	E	R	D	F	L	K	R	P	L	E	.	.	.	S	Y	V	K	K	L	K	.	.	V	P	V	H	V	I	R
Template Known Secondary structure			S												S	S						.	.	.	.											S	S		G	G	G										S				G	G	G	T					.	.	.					S	S	S	.	.	S
Template Predicted Secondary structure																						.	.	.	.																																						.	.	.								.	.
Template SS confidence
		112	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.					.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.				.	170	.	.	.	.	.			.	.	.	.	180	.	.
		317	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.
Predicted Secondary structure																																																																						.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																																						.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		R	R	R	R	V	K	R	K	S	G	N	I	D	D	F	C	R	R	W	G	S	Q	Y	S	Y	M	V	V	L	D	A	D	S	V	M	T	G	D	C	L	C	G	L	V	R	L	M	E	A	N	P	N	A	G	I	I	Q	S	S	P	K	A	S	G	M	D	T	L	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation																																																																						.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence								.												.	.																																		.															.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation								.												.	.																																		.
Template Sequence		M	E	Q	R	S	G	.	L	I	R	A	R	L	K	G	A	A	V	.	.	S	R	G	Q	V	I	T	F	L	D	A	H	C	E	C	T	A	G	W	L	E	P	L	L	A	R	I	K	H	D	R	R	T	.	V	V	C	P	I	I	D	V	I	S	D	D	T	F	E	Y	M	A	G	S	D	M	T	Y	G	G
Template Known Secondary structure			S	S				.												.	.			S	S							S	S					T	T													T	T		.											S	S	S								T	T
Template Predicted Secondary structure								.												.	.																																		.
Template SS confidence
		183	.	.	.	.	.		.	190	.	.	.	.	.	.	.	.	.			200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.		.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.
		385	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410				.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.				.	.	.	450	.	.	.	.	.	.	.	.
Predicted Secondary structure																												.	.	.																																					.	.	.
Query SS confidence																												.	.	.																																					.	.	.
Query Sequence		Y	A	R	C	Q	Q	F	A	T	R	V	Y	G	P	L	F	T	A	G	L	H	F	W	Q	L	G	.	.	.	E	S	H	Y	W	G	H	N	A	I	I	R	V	K	P	F	I	E	H	C	A	L	A	P	L	P	G	E	G	S	F	A	G	S	I	L	.	.	.	S	H	D	F	V	E	A	A	L	M	R	R
Query Conservation																												.	.	.																																					.	.	.
Alig confidence																												.	.	.																			.	.	.	.	.	.	.	.	.										.	.	.
Template Conservation																																																	.	.	.	.	.	.	.	.	.
Template Sequence		F	N	W	K	L	N	F	R	W	Y	P	V	P	Q	R	E	M	D	R	R	K	G	D	R	T	L	P	V	R	T	P	T	M	A	G	G	L	F	S	I	D	R	D	Y	F	Q	E	.	.	.	.	.	.	.	.	.	I	G	T	Y	D	A	G	M	D	I	W	G	G	E	N	L	E	I	S	F	R	I	W	Q
Template Known Secondary structure				T	T																T	T	T		T	T	S					S	B			S	S	S											.	.	.	.	.	.	.	.	.	T	T	S			T	T	S		T	T					S
Template Predicted Secondary structure																																																	.	.	.	.	.	.	.	.	.
Template SS confidence
		259	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.										.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.
		459	460	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	G	W	G	V	W	I	A	Y	D
Query Conservation
Alig confidence
Template Conservation
Template Sequence		C	G	G	T	L	E	I	V	T	C
Template Known Secondary structure		T	T
Template Predicted Secondary structure
Template SS confidence
		330	.	.	.	.	.	.	.	.	.

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions