Job Description P0AG30 Confidence 100.00% Date Thu Jan 5 11:27:58 GMT 2012 Rank 2 Aligned Residues 347 % Identity 58% Template c3l0oB_ PDB info PDB header:hydrolase Chain: B: PDB Molecule:transcription termination factor rho; PDBTitle: structure of rna-free rho transcription termination factor from2 thermotoga maritima Resolution 2.35 Å

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		51	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130
Predicted Secondary structure
Query SS confidence
Query Sequence		G	D	G	V	L	E	I	L	Q	D	G	F	G	F	L	R	S	A	D	S	S	Y	L	A	G	P	D	D	I	Y	V	S	P	S	Q	I	R	R	F	N	L	R	T	G	D	T	I	S	G	K	I	R	P	P	K	E	G	E	R	Y	F	A	L	L	K	V	N	E	V	N	F	D	K	P	E	N	A	R	N	K
Query Conservation
Alig confidence																																																					.	.	.	.	.	.	.	.	.	.													.	.	.	.	.	.
Template Conservation																																																					.	.	.	.	.	.	.	.	.	.													.	.	.	.	.	.
Template Sequence		G	E	G	V	L	E	I	H	P	E	G	F	G	F	L	R	R	I	E	D	N	L	L	P	S	N	D	D	I	Y	I	S	P	S	Q	I	R	K	F	N	L	N	T	G	D	I	I	S	G	V	I	.	.	.	.	.	.	.	.	.	.	A	M	I	K	I	E	A	I	N	Y	R	P	.	.	.	.	.	.	R
Template Known Secondary structure										S	S	S							G	G	G	T	T				T	T						S	S	S	S	S	S	S				T	T								.	.	.	.	.	.	.	.	.	.			S			S			S	S			.	.	.	.	.	.
Template Predicted Secondary structure																																																					.	.	.	.	.	.	.	.	.	.													.	.	.	.	.	.
Template SS confidence
		58	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.											.	110	.	.	.	.	.	.	.	.	.	120							.
		131	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Predicted Secondary structure
Query SS confidence
Query Sequence		I	L	F	E	N	L	T	P	L	H	A	N	S	R	L	R	M	E	R	G	N	G	S	T	E	D	L	T	A	R	V	L	D	L	A	S	P	I	G	R	G	Q	R	G	L	I	V	A	P	P	K	A	G	K	T	M	L	L	Q	N	I	A	Q	S	I	A	Y	N	H	P	D	C	V	L	M	V	L	L	I	D
Query Conservation
Alig confidence																					.	.	.
Template Conservation																					.	.	.
Template Sequence		V	N	F	D	N	L	T	P	D	Y	P	R	E	R	F	I	L	E	T	.	.	.	D	P	K	I	Y	S	T	R	L	I	D	L	F	A	P	I	G	K	G	Q	R	G	M	I	V	A	P	P	K	A	G	K	T	T	I	L	K	E	I	A	N	G	I	A	E	N	H	P	D	T	I	R	I	I	L	L	I	D
Template Known Secondary structure				T	T	T	S							S	B						.	.	.	S	T	T											S			B	T	T									T	T	S	S																	T	T	S
Template Predicted Secondary structure																					.	.	.
Template SS confidence
		138	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.				.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.
		211	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290
Predicted Secondary structure
Query SS confidence
Query Sequence		E	R	P	E	E	V	T	E	M	Q	R	L	V	K	G	E	V	V	A	S	T	F	D	E	P	A	S	R	H	V	Q	V	A	E	M	V	I	E	K	A	K	R	L	V	E	H	K	K	D	V	I	I	L	L	D	S	I	T	R	L	A	R	A	Y	N	T	V	V	P	A	S	G	K	V	L	T	G	G	V	D
Query Conservation
Alig confidence
Template Conservation
Template Sequence		E	R	P	E	E	V	T	D	I	R	E	S	T	N	A	I	V	I	A	A	P	F	D	M	P	P	D	K	Q	V	K	V	A	E	L	T	L	E	M	A	K	R	L	V	E	F	N	Y	D	V	V	I	L	L	D	S	L	T	R	L	A	R	V	Y	N	I	V	V	P	P	S	G	K	L	L	T	G	G	V	D
Template Known Secondary structure												T	T	S		S							T	T	S																						T	T																					S		S		S	S			S	S	S
Template Predicted Secondary structure
Template SS confidence
		215	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.
		291	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370
Predicted Secondary structure
Query SS confidence
Query Sequence		A	N	A	L	H	R	P	K	R	F	F	G	A	A	R	N	V	E	E	G	G	S	L	T	I	I	A	T	A	L	I	D	T	G	S	K	M	D	E	V	I	Y	E	E	F	K	G	T	G	N	M	E	L	H	L	S	R	K	I	A	E	K	R	V	F	P	A	I	D	Y	N	R	S	G	T	R	K	E	E	L
Query Conservation
Alig confidence
Template Conservation
Template Sequence		P	A	A	L	Y	K	P	K	R	F	F	G	A	A	R	N	T	R	E	G	G	S	L	T	I	I	A	T	A	L	V	E	T	G	S	K	M	D	E	V	I	F	E	E	F	K	G	T	G	N	M	E	L	V	L	S	R	Q	L	A	N	K	R	I	F	P	A	I	N	L	L	L	S	G	T	R	R	E	E	L
Template Known Secondary structure		T	T	T	T	S	T						T	T		B			S	S	S												S	S	S		T	T	T	B	T	T					T	T			S					B						T	T	T		S	S		B		G	G	G				T	T	G	G	G
Template Predicted Secondary structure
Template SS confidence
		295	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.
		371	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	T	T	Q	E	E	L	Q	K	M	W	I	L	R	K	I	I	H	P	M	G	E	I	D	A	M	E	F	L	I	N	K	L	A	M	T	K	T	N	D	D	F	F	E	M	M
Query Conservation
Alig confidence
Template Conservation
Template Sequence		L	L	D	E	E	T	L	K	K	V	W	L	L	R	R	M	L	S	A	M	T	E	E	E	G	L	T	L	I	L	N	K	L	S	E	T	S	S	N	E	E	F	L	K	L	I
Template Known Secondary structure		T	S														T	T	T	T	S		T	T												T		S	S							T
Template Predicted Secondary structure
Template SS confidence
		375	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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